org.biopax.paxtools.pattern.constraint

Class Type

java.lang.Object

org.biopax.paxtools.pattern.constraint.ConstraintAdapter

org.biopax.paxtools.pattern.constraint.Type

All Implemented Interfaces:

Constraint

public class Type
extends ConstraintAdapter

Checks if a variable is a specific type or its subclass.

Author:

Ozgun Babur

Field Summary

Fields inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

blacklist, size

Constructor Summary

Constructors

Constructor and Description
Type(Class<? extends BioPAXElement> clazz) Constructor with the desired class.

Method Summary

Modifier and Type	Method and Description
boolean	satisfies(Match match, int... ind) Checks if the element is assignable to a variable of the desired type.

Methods inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

assertIndLength, canGenerate, convertStepDirection, findDirectionInCatalysis, findDirectionInPathways, generate, getCatalysisDirection, getControlChain, getConvParticipants, getDirection, getDirection, getDirection, getDirection, getVariableSize, setSize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Type

public Type(Class<? extends BioPAXElement> clazz)

Constructor with the desired class.

Parameters:

clazz - desired class

Method Detail

satisfies

public boolean satisfies(Match match,
                         int... ind)

Checks if the element is assignable to a variable of the desired type.

Specified by:

satisfies in interface Constraint

Overrides:

satisfies in class ConstraintAdapter

Parameters:

match - current pattern match

ind - mapped indices

Returns:

true if the element is assignable to a variable of the desired type