org.biopax.paxtools.pattern.miner

Class CustomFormat

java.lang.Object

org.biopax.paxtools.pattern.miner.CustomFormat

All Implemented Interfaces:

SIFToText

public class CustomFormat
extends Object
implements SIFToText

Used for customizing the columns in the SIF text output.

Author:

Ozgun Babur

Constructor Summary

Constructors

Constructor and Description
CustomFormat(String... cols)

Method Summary

Modifier and Type	Method and Description
String	convert(SIFInteraction inter) Prepares the line in the output file for the given interaction.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CustomFormat

public CustomFormat(String... cols)

Method Detail

convert

public String convert(SIFInteraction inter)

Prepares the line in the output file for the given interaction.

Specified by:

convert in interface SIFToText

Parameters:

inter - the interaction

Returns:

output line.