org.biopax.paxtools.pattern.miner

Class OutputColumn

java.lang.Object

org.biopax.paxtools.pattern.miner.OutputColumn

public class OutputColumn
extends Object

This class is used for defining a custom column in the te

Author:

Ozgun Babur

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	OutputColumn.Type Type of the output column.

Constructor Summary

Constructors

Constructor and Description
OutputColumn(String field) Constructor with output type.

Method Summary

Modifier and Type	Method and Description
String	getColumnValue(SIFInteraction inter) Get the string to write in the output file.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

OutputColumn

public OutputColumn(String field)

Constructor with output type. The field parameter can either be a value among OutputValue.Type enum (excluding the value CUSTOM), or a PathAccessor string to apply to mediator objects.

Parameters:

field - type of the custom field

Method Detail

getColumnValue

public String getColumnValue(SIFInteraction inter)

Get the string to write in the output file.

Parameters:

inter - the binary interaction

Returns:

column value