Uses of Class
org.biopax.paxtools.pattern.util.PhysicalEntityChain

Packages that use PhysicalEntityChain

Package	Description
org.biopax.paxtools.pattern.miner	Package for pattern miner utility.
org.biopax.paxtools.pattern.util	Package for several utility classes.

Uses of PhysicalEntityChain in org.biopax.paxtools.pattern.miner

Methods in org.biopax.paxtools.pattern.miner that return PhysicalEntityChain

Modifier and Type	Method and Description
protected PhysicalEntityChain	MinerAdapter.getChain(Match m, String memLabel, String comLabel)

Uses of PhysicalEntityChain in org.biopax.paxtools.pattern.util

Methods in org.biopax.paxtools.pattern.util with parameters of type PhysicalEntityChain

Modifier and Type	Method and Description
boolean	PhysicalEntityChain.intersects(PhysicalEntityChain rpeh) Checks if two chains intersect without ignoring endpoint intersection.
boolean	PhysicalEntityChain.intersects(PhysicalEntityChain rpeh, boolean ignoreEndPoints) Checks if two chains intersect.