org.biopax.paxtools.pattern.constraint

Class ActivityConstraint

java.lang.Object

org.biopax.paxtools.pattern.constraint.ConstraintAdapter

org.biopax.paxtools.pattern.constraint.ActivityConstraint

All Implemented Interfaces:

Constraint

public class ActivityConstraint
extends ConstraintAdapter

Checks if the PhysicalEntity controls anything.

Author:

Ozgun Babur

Field Summary

Fields inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

blacklist, size

Constructor Summary

Constructors

Constructor and Description
ActivityConstraint(boolean active) Constructor with the desired activity.

Method Summary

Modifier and Type	Method and Description
boolean	satisfies(Match match, int... ind) Checks if the PhysicalEntity controls anything.

Methods inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

assertIndLength, canGenerate, convertStepDirection, findDirectionInCatalysis, findDirectionInPathways, generate, getCatalysisDirection, getControlChain, getConvParticipants, getDirection, getDirection, getDirection, getDirection, getVariableSize, setSize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ActivityConstraint

public ActivityConstraint(boolean active)

Constructor with the desired activity.

Parameters:

active - desires activity

Method Detail

satisfies

public boolean satisfies(Match match,
                         int... ind)

Checks if the PhysicalEntity controls anything.

Specified by:

satisfies in interface Constraint

Overrides:

satisfies in class ConstraintAdapter

Parameters:

match - current match to validate

ind - mapped index

Returns:

true if it controls anything