org.biopax.paxtools.pattern.constraint

Class IDConstraint

java.lang.Object

org.biopax.paxtools.pattern.constraint.ConstraintAdapter

org.biopax.paxtools.pattern.constraint.IDConstraint

All Implemented Interfaces:

Constraint

public class IDConstraint
extends ConstraintAdapter

Checks if the element has the desired ID. This is a separate class (not reusing FieldConstraint) because PathAccessor cannot access to RDFIDs.

Author:

Ozgun Babur

Field Summary

Fields inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

blacklist, size

Constructor Summary

Constructors

Constructor and Description
IDConstraint(Set<String> ids) Constructor with desired IDs.

Method Summary

Modifier and Type	Method and Description
int	getVariableSize() Returns 1.
boolean	satisfies(Match match, int... ind) Checks if the element has one of the desired IDs.

Methods inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

assertIndLength, canGenerate, convertStepDirection, findDirectionInCatalysis, findDirectionInPathways, generate, getCatalysisDirection, getControlChain, getConvParticipants, getDirection, getDirection, getDirection, getDirection, setSize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IDConstraint

public IDConstraint(Set<String> ids)

Constructor with desired IDs.

Parameters:

ids - desired IDs for valid elements to have

Method Detail

getVariableSize

public int getVariableSize()

Returns 1.

Specified by:

getVariableSize in interface Constraint

Overrides:

getVariableSize in class ConstraintAdapter

Returns:

1

satisfies

public boolean satisfies(Match match,
                         int... ind)

Checks if the element has one of the desired IDs.

Specified by:

satisfies in interface Constraint

Overrides:

satisfies in class ConstraintAdapter

Parameters:

match - current pattern match

ind - mapped indices

Returns:

true if the ID is in the list