org.biopax.paxtools.pattern.constraint

Class Size

java.lang.Object

org.biopax.paxtools.pattern.constraint.ConstraintAdapter

org.biopax.paxtools.pattern.constraint.Size

All Implemented Interfaces:

Constraint

public class Size
extends ConstraintAdapter

Checks the size of the generated elements of the wrapped constraint.

Author:

Ozgun Babur

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	Size.Type Type of the (in)equality.

Field Summary

Fields inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

blacklist

Constructor Summary

Constructors

Constructor and Description
Size(Constraint con, int size, Size.Type type) Constructor with parameters.

Method Summary

Modifier and Type	Method and Description
int	getVariableSize() Size is one less than the size of wrapped constraint.
boolean	satisfies(Match match, int... ind) Checks if generated element size is in limits.

Methods inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

assertIndLength, canGenerate, convertStepDirection, findDirectionInCatalysis, findDirectionInPathways, generate, getCatalysisDirection, getControlChain, getConvParticipants, getDirection, getDirection, getDirection, getDirection, setSize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Size

public Size(Constraint con,
            int size,
            Size.Type type)

Constructor with parameters.

Parameters:

con - wrapped generative constraint

size - size threshold

type - type of (in)equality

Method Detail

getVariableSize

public int getVariableSize()

Size is one less than the size of wrapped constraint.

Specified by:

getVariableSize in interface Constraint

Overrides:

getVariableSize in class ConstraintAdapter

Returns:

one less than the size of wrapped constraint

satisfies

public boolean satisfies(Match match,
                         int... ind)

Checks if generated element size is in limits.

Specified by:

satisfies in interface Constraint

Overrides:

satisfies in class ConstraintAdapter

Parameters:

match - current pattern match

ind - mapped indices

Returns:

true if generated element size is in limits