org.biopax.paxtools.pattern.miner

Class BlacklistGenerator2

java.lang.Object

org.biopax.paxtools.pattern.miner.BlacklistGenerator2

public class BlacklistGenerator2
extends Object

This class generates a blacklist for the given model. It is important that the given model is the very big integrated corpus. It won't work on tiny little model.

Author:

Ozgun Babur

Constructor Summary

Constructors

Constructor and Description
BlacklistGenerator2() Default constructor.
BlacklistGenerator2(org.biopax.paxtools.pattern.miner.BlacklistGenerator2.Decider decider) Constructor with decider.

Method Summary

Modifier and Type	Method and Description
Blacklist	generateBlacklist(Model model) Generates the blacklist.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BlacklistGenerator2

public BlacklistGenerator2(org.biopax.paxtools.pattern.miner.BlacklistGenerator2.Decider decider)

Constructor with decider. This decider should be optimized for the specific resource that the user deals with.

Parameters:

decider - decides if the molecule is ubique

BlacklistGenerator2

public BlacklistGenerator2()

Default constructor.

Method Detail

generateBlacklist

public Blacklist generateBlacklist(Model model)
                            throws IOException

Generates the blacklist.

Parameters:

model - model to use

Returns:

the blacklist

Throws:

IOException - when there is an I/O problem