Uses of Class
org.biopax.paxtools.pattern.miner.ConfigurableIDFetcher

Packages that use ConfigurableIDFetcher

Package	Description
org.biopax.paxtools.pattern.miner	Package for pattern miner utility.

Uses of ConfigurableIDFetcher in org.biopax.paxtools.pattern.miner

Methods in org.biopax.paxtools.pattern.miner that return ConfigurableIDFetcher

Modifier and Type	Method and Description
ConfigurableIDFetcher	ConfigurableIDFetcher.chemDbStartsWithOrEquals(String dbStartsWithOrEquals) Set to prefer collecting chemical IDs of such Xrefs where the small molecules db starts with or equals given string, ignoring case.
ConfigurableIDFetcher	ConfigurableIDFetcher.seqDbStartsWithOrEquals(String dbStartsWithOrEquals) Set to prefer collecting gene/sequence IDs of such Xrefs where the db starts with or equals given string, ignoring case.
ConfigurableIDFetcher	ConfigurableIDFetcher.useNameWhenNoDbMatch(boolean useNameWhenNoDbMatch) Set the flag to use the entity reference's names when no desired ID type can be found (none of xref.db matched before, or there're no xrefs at all).