Uses of Interface
org.biopax.paxtools.pattern.miner.Miner

Packages that use Miner

Package	Description
org.biopax.paxtools.pattern.miner	Package for pattern miner utility.

Uses of Miner in org.biopax.paxtools.pattern.miner

Subinterfaces of Miner in org.biopax.paxtools.pattern.miner

Modifier and Type	Interface and Description
interface	SIFMiner This interface tells that the miner supports SIF output.

Classes in org.biopax.paxtools.pattern.miner that implement Miner

Modifier and Type	Class and Description
class	AbstractSIFMiner Base class for SIF Miners.
class	CatalysisPrecedesMiner Miner for the catalysis-precedes pattern.
class	ChemicalAffectsThroughBindingMiner Miner for the chemical-affects-protein pattern.
class	ChemicalAffectsThroughControlMiner Miner for the chemical-affects-protein pattern.
class	ConsumptionControlledByMiner Miner for the consumption-controlled-by pattern.
class	ControlsDegradationIndirectMiner Yet another miner for the controls-degradation pattern.
class	ControlsExpressionMiner Miner for the transcriptional regulation pattern.
class	ControlsExpressionWithConvMiner Miner for the transcriptional regulation pattern, modeled using Conversion.
class	ControlsPhosphorylationMiner Miner for the controls-phosphorylation pattern.
class	ControlsProductionOfMiner Miner for the controls-production-of pattern.
class	ControlsStateChangeDetailedMiner Miner for the controls-state-change-detailed pattern.
class	ControlsStateChangeOfMiner Miner for the controls-state-change pattern.
class	ControlsTransportMiner Miner for the controls-transport pattern.
class	ControlsTransportOfChemicalMiner Miner for the controls-transport-of-chemical pattern.
class	CSCOBothControllerAndParticipantMiner Miner for the controls-state-change pattern.
class	CSCOButIsParticipantMiner Miner for the controls-state-change pattern.
class	CSCOThroughBindingSmallMoleculeMiner Miner for the controls-state-change pattern.
class	CSCOThroughControllingSmallMoleculeMiner Miner for the controls-state-change pattern.
class	CSCOThroughDegradationMiner Miner for the degradation pattern.
class	DirectedRelationMiner Miner for the directed relations between proteins.
class	InComplexWithMiner Miner for the degradation pattern.
class	InteractsWithMiner Miner for the "interacts-with" relation.
class	MinerAdapter Adapter class for a miner.
class	NeighborOfMiner Miner for the "neighbor-of" relation.
class	ReactsWithMiner Miner for the "reacts-with" relation.
class	RelatedGenesOfInteractionsMiner Miner for the related genes (participant or controller) of interactions.
class	UbiquitousIDMiner Miner for getting ubiquitous small molecules in a model.
class	UsedToProduceMiner Miner for the "used-for-production-of" relation.

Constructors in org.biopax.paxtools.pattern.miner with parameters of type Miner

Constructor and Description
Dialog(Miner... miners) Constructor for the dialog.