org.biopax.paxtools.pattern.miner

Interfaces

• IDFetcher
• Miner
• SIFMiner
• SIFToText
• SIFType

Classes

• AbstractSIFMiner
• BlacklistGenerator
• BlacklistGenerator2
• BlacklistGenerator3
• CatalysisPrecedesMiner
• ChemicalAffectsThroughBindingMiner
• ChemicalAffectsThroughControlMiner
• CommonIDFetcher
• ConfigurableIDFetcher
• ConsumptionControlledByMiner
• ControlsDegradationIndirectMiner
• ControlsExpressionMiner
• ControlsExpressionWithConvMiner
• ControlsPhosphorylationMiner
• ControlsProductionOfMiner
• ControlsStateChangeDetailedMiner
• ControlsStateChangeOfMiner
• ControlsTransportMiner
• ControlsTransportOfChemicalMiner
• CSCOBothControllerAndParticipantMiner
• CSCOButIsParticipantMiner
• CSCOThroughBindingSmallMoleculeMiner
• CSCOThroughControllingSmallMoleculeMiner
• CSCOThroughDegradationMiner
• CustomFormat
• Dialog
• DirectedRelationMiner
• ExtendedSIFWriter
• InComplexWithMiner
• InteractsWithMiner
• MinerAdapter
• NeighborOfMiner
• OutputColumn
• ReactsWithMiner
• RelatedGenesOfInteractionsMiner
• SIFInteraction
• SIFSearcher
• SimpleIDFetcher
• UbiquitousIDMiner
• UsedToProduceMiner

Enums

• OutputColumn.Type
• SIFEnum