Package org.biopax.paxtools.pattern.constraint

Class ControlToControllerER

java.lang.Object

org.biopax.paxtools.pattern.constraint.ConstraintAdapter

org.biopax.paxtools.pattern.constraint.ControlToControllerER

All Implemented Interfaces:

Constraint

public class ControlToControllerER
extends ConstraintAdapter

This constraint is used to collect related EntityReference of the controllers of a Control. Var0 - Control Var1 - ER of a controller PE

Author:

Ozgun Babur

Field Summary

Fields inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

blacklist, size

Constructor Summary

Constructors

Constructor	Description
ControlToControllerER()	Constructor.

Method Summary

Modifier and Type	Method	Description
boolean	canGenerate()	This is a generative constraint.
Collection<BioPAXElement>	generate(Match match, int... ind)	Navigates to the related ERs of the controllers of the given Control.
Set<EntityReference>	getRelatedERs(Control ctrl)
Set<EntityReference>	getRelatedERs(PhysicalEntity pe)

Methods inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

assertIndLength, convertStepDirection, findDirectionInCatalysis, findDirectionInPathways, getCatalysisDirection, getControlChain, getConvParticipants, getDirection, getDirection, getDirection, getDirection, getVariableSize, satisfies, setSize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ControlToControllerER

public ControlToControllerER()

Constructor.

Method Details

canGenerate

public boolean canGenerate()

This is a generative constraint.

Specified by:

canGenerate in interface Constraint

Overrides:

canGenerate in class ConstraintAdapter

Returns:

true

generate

public Collection<BioPAXElement> generate(Match match,
 int... ind)

Navigates to the related ERs of the controllers of the given Control.

Specified by:

generate in interface Constraint

Overrides:

generate in class ConstraintAdapter

Parameters:

match - current pattern match

ind - mapped indices

Returns:

related ERs

getRelatedERs

public Set<EntityReference> getRelatedERs(Control ctrl)

getRelatedERs

public Set<EntityReference> getRelatedERs(PhysicalEntity pe)