Package org.biopax.paxtools.pattern.constraint

Class ControlsNotParticipant

java.lang.Object

org.biopax.paxtools.pattern.constraint.ConstraintAdapter

org.biopax.paxtools.pattern.constraint.ControlsNotParticipant

All Implemented Interfaces:

Constraint

public class ControlsNotParticipant
extends ConstraintAdapter

Checks if a controller of this Control is also a participant of the controlled interactions. It satisfies if not. var0 is a Control

Author:

Ozgun Babur

Field Summary

Fields inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

blacklist, size

Constructor Summary

Constructors

Constructor	Description
ControlsNotParticipant()	Constructor.

Method Summary

Modifier and Type	Method	Description
boolean	satisfies(Match match, int... ind)	Checks if the controlled Interaction contains a controller as a participant.

Methods inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

assertIndLength, canGenerate, convertStepDirection, findDirectionInCatalysis, findDirectionInPathways, generate, getCatalysisDirection, getControlChain, getConvParticipants, getDirection, getDirection, getDirection, getDirection, getVariableSize, setSize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ControlsNotParticipant

public ControlsNotParticipant()

Constructor.

Method Details

satisfies

public boolean satisfies(Match match,
 int... ind)

Checks if the controlled Interaction contains a controller as a participant. This constraint filters out such cases.

Specified by:

satisfies in interface Constraint

Overrides:

satisfies in class ConstraintAdapter

Parameters:

match - current pattern match

ind - mapped indices

Returns:

true if participants of teh controlled Interactions not also a controller of the Control.