Package org.biopax.paxtools.pattern.constraint

Class FieldOfMultiple

java.lang.Object

org.biopax.paxtools.pattern.constraint.ConstraintAdapter

org.biopax.paxtools.pattern.constraint.Field

org.biopax.paxtools.pattern.constraint.FieldOfMultiple

All Implemented Interfaces:

Constraint

public class FieldOfMultiple
extends Field

Checks if generated elements has or has not a specific value for a field, or the field value of another set of generated elements.

Author:

Ozgun Babur

Nested Class Summary

Nested classes/interfaces inherited from class org.biopax.paxtools.pattern.constraint.Field

Field.Operation

Field Summary

Fields

Modifier and Type	Field	Description
protected MappedConst	con1	Generative constraint for first group of generated elements, to use on first mapped element.
protected MappedConst	con2	Generative constraint for second group of generated elements, to use on second mapped element.

Fields inherited from class org.biopax.paxtools.pattern.constraint.Field

EMPTY, USE_SECOND_ARG

Fields inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

blacklist, size

Constructor Summary

Constructors

Constructor	Description
FieldOfMultiple(MappedConst con, String accessorString, Field.Operation oper, Object value)	Constructor with accessor string for the field value of the element and the desired value.
FieldOfMultiple(MappedConst con1, String accessorString1, MappedConst con2, String accessorString2, Field.Operation oper)	Constructor with accessor strings for the field value of the element and the desired value that will be reached from the second element.

Method Summary

Modifier and Type	Method	Description
int	getVariableSize()	Size of this constraint is one less than con1 if con2 is null, otherwise it is two less than the total of size of con1 and con2.
boolean	satisfies(Match match, int... ind)	Checks if the generated elements from the first mapped element has either the desired value, or has some value in common with the elements generated from second mapped element.

Methods inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

assertIndLength, canGenerate, convertStepDirection, findDirectionInCatalysis, findDirectionInPathways, generate, getCatalysisDirection, getControlChain, getConvParticipants, getDirection, getDirection, getDirection, getDirection, setSize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

con1

protected MappedConst con1

Generative constraint for first group of generated elements, to use on first mapped element.

con2

protected MappedConst con2

Generative constraint for second group of generated elements, to use on second mapped element.

Constructor Details

FieldOfMultiple

public FieldOfMultiple(MappedConst con,
 String accessorString,
 Field.Operation oper,
 Object value)

Constructor with accessor string for the field value of the element and the desired value. If the desired value is EMPTY, then emptiness is checked. If it is USE_SECOND_ARG, then the second mapped element is used as the desired value. If a filed of the second element is desired then the other constructor should be used.

Parameters:

con - the generative constraint of size 2 whose generated values will be checked

accessorString - accessor string for the element

oper - operation

value - desired value

FieldOfMultiple

public FieldOfMultiple(MappedConst con1,
 String accessorString1,
 MappedConst con2,
 String accessorString2,
 Field.Operation oper)

Constructor with accessor strings for the field value of the element and the desired value that will be reached from the second element.

Parameters:

con1 - the generative constraint of size 2 for the first group of elements

accessorString1 - accessor string for the first element

con2 - the generative constraint of size 2 for the second group of elements

accessorString2 - accessor string for the second element

oper - operation

Method Details

getVariableSize

public int getVariableSize()

Size of this constraint is one less than con1 if con2 is null, otherwise it is two less than the total of size of con1 and con2.

Specified by:

getVariableSize in interface Constraint

Overrides:

getVariableSize in class ConstraintAdapter

Returns:

the size based on con1 and con2

satisfies

public boolean satisfies(Match match,
 int... ind)

Checks if the generated elements from the first mapped element has either the desired value, or has some value in common with the elements generated from second mapped element.

Specified by:

satisfies in interface Constraint

Overrides:

satisfies in class Field

Parameters:

match - current pattern match

ind - mapped indices

Returns:

true if a value match is found