Package org.biopax.paxtools.pattern.constraint

Class XOR

java.lang.Object

org.biopax.paxtools.pattern.constraint.ConstraintAdapter

org.biopax.paxtools.pattern.constraint.OR

org.biopax.paxtools.pattern.constraint.XOR

All Implemented Interfaces:

Constraint

public class XOR
extends OR

Used for getting logical XOR of a set of constraints.

Author:

Ozgun Babur

Field Summary

Fields inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

blacklist, size

Constructor Summary

Constructors

Constructor	Description
XOR(MappedConst... con)	Constructor with the mapped constraints.

Method Summary

Modifier and Type	Method	Description
Collection<BioPAXElement>	generate(Match match, int... ind)	Gets xor of the generated elements by the member constraints.
boolean	satisfies(Match match, int... ind)	Checks if constraints satisfy in xor pattern.

Methods inherited from class org.biopax.paxtools.pattern.constraint.OR

canGenerate, getVariableSize, max

Methods inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

assertIndLength, convertStepDirection, findDirectionInCatalysis, findDirectionInPathways, getCatalysisDirection, getControlChain, getConvParticipants, getDirection, getDirection, getDirection, getDirection, setSize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

XOR

public XOR(MappedConst... con)

Constructor with the mapped constraints.

Parameters:

con - mapped constraints

Method Details

satisfies

public boolean satisfies(Match match,
 int... ind)

Checks if constraints satisfy in xor pattern.

Specified by:

satisfies in interface Constraint

Overrides:

satisfies in class OR

Parameters:

match - match to validate

ind - mapped indices

Returns:

true if all satisfy

generate

public Collection<BioPAXElement> generate(Match match,
 int... ind)

Gets xor of the generated elements by the member constraints.

Specified by:

generate in interface Constraint

Overrides:

generate in class OR

Parameters:

match - match to process

ind - mapped indices

Returns:

satisfying elements