Package org.biopax.paxtools.pattern.miner

Class BlacklistGenerator2

java.lang.Object
org.biopax.paxtools.pattern.miner.BlacklistGenerator2
public class BlacklistGenerator2 extends Object
This class generates a blacklist for the given model. It is important that the given model is the very big integrated corpus. It won't work on tiny little model.
Author:
Ozgun Babur

  • Constructor Details

    • BlacklistGenerator2

      public BlacklistGenerator2(org.biopax.paxtools.pattern.miner.BlacklistGenerator2.Decider decider)
      Constructor with decider. This decider should be optimized for the specific resource that the user deals with.
      Parameters:
      decider - decides if the molecule is ubique

    • BlacklistGenerator2

      public BlacklistGenerator2()
      Default constructor.

  • Method Details

    • generateBlacklist

      public Blacklist generateBlacklist(Model model) throws IOException
      Generates the blacklist.
      Parameters:
      model - model to use
      Returns:
      the blacklist
      Throws:
      IOException - when there is an I/O problem