Package org.biopax.paxtools.pattern.miner

Class ControlsPhosphorylationMiner

java.lang.Object

org.biopax.paxtools.pattern.miner.MinerAdapter

org.biopax.paxtools.pattern.miner.AbstractSIFMiner

org.biopax.paxtools.pattern.miner.ControlsStateChangeOfMiner

org.biopax.paxtools.pattern.miner.ControlsPhosphorylationMiner

All Implemented Interfaces:

Miner, SIFMiner

public class ControlsPhosphorylationMiner
extends ControlsStateChangeOfMiner

Miner for the controls-phosphorylation pattern.

Author:

Ozgun Babur

Field Summary

Fields inherited from class org.biopax.paxtools.pattern.miner.MinerAdapter

blacklist, description, idFetcher, idMap, name

Constructor Summary

Constructors

Constructor	Description
ControlsPhosphorylationMiner()	Constructor that sets the type.

Method Summary

Modifier and Type	Method	Description
Pattern	constructPattern()	Constructs the pattern.

Methods inherited from class org.biopax.paxtools.pattern.miner.ControlsStateChangeOfMiner

getMediatorLabels, getSourceLabel, getSourcePELabels, getTargetLabel, getTargetPELabels

Methods inherited from class org.biopax.paxtools.pattern.miner.AbstractSIFMiner

getSIFType, setType, writeResult

Methods inherited from class org.biopax.paxtools.pattern.miner.MinerAdapter

concat, createSIFInteraction, fetchIDs, getCellularLocations, getChain, getCompoundName, getDeltaCompartments, getDeltaModifications, getDescription, getGeneSymbol, getGeneSymbol, getHeader, getIdentifiers, getIdMap, getModifications, getModifications, getModificationTerm, getName, getPattern, getPositionInString, getPositionStart, getRelationType, getUniprotNameForHuman, getUniprotNameForHuman, getValue, isInhibition, labeledInactive, removeCommon, setBlacklist, setDescription, setIDFetcher, setIdMap, setName, sign, sign, toString, toStringSet, writeResultAsSIF, writeResultDetailed, writeSIFsUsingSIFFramework

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.pattern.miner.Miner

getDescription, getName, getPattern

Methods inherited from interface org.biopax.paxtools.pattern.miner.SIFMiner

createSIFInteraction, setBlacklist, setIDFetcher

Constructor Details

ControlsPhosphorylationMiner

public ControlsPhosphorylationMiner()

Constructor that sets the type.

Method Details

constructPattern

public Pattern constructPattern()

Constructs the pattern.

Overrides:

constructPattern in class ControlsStateChangeOfMiner

Returns:

pattern