Package org.biopax.paxtools.pattern.miner

Class CustomFormat

java.lang.Object

org.biopax.paxtools.pattern.miner.CustomFormat

All Implemented Interfaces:

SIFToText

public class CustomFormat
extends Object
implements SIFToText

Used for customizing the columns in the SIF text output.

Author:

Ozgun Babur

Constructor Summary

Constructors

Constructor	Description
CustomFormat(String... cols)

Method Summary

Modifier and Type	Method	Description
String	convert(SIFInteraction inter)	Prepares the line in the output file for the given interaction.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

CustomFormat

public CustomFormat(String... cols)

Method Details

convert

public String convert(SIFInteraction inter)

Prepares the line in the output file for the given interaction.

Specified by:

convert in interface SIFToText

Parameters:

inter - the interaction

Returns:

output line.