Uses of Class
org.biopax.paxtools.pattern.miner.ConfigurableIDFetcher
Packages that use ConfigurableIDFetcher
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Uses of ConfigurableIDFetcher in org.biopax.paxtools.pattern.miner
Methods in org.biopax.paxtools.pattern.miner that return ConfigurableIDFetcherModifier and TypeMethodDescriptionConfigurableIDFetcher.chemDbStartsWithOrEquals(String dbStartsWithOrEquals) Set to prefer collecting chemical IDs of such Xrefs where the small molecules db starts with or equals given string, ignoring case.ConfigurableIDFetcher.seqDbStartsWithOrEquals(String dbStartsWithOrEquals) Set to prefer collecting gene/sequence IDs of such Xrefs where the db starts with or equals given string, ignoring case.ConfigurableIDFetcher.useNameWhenNoDbMatch(boolean useNameWhenNoDbMatch) Set the flag to use the entity reference's names when no desired ID type can be found (none of xref.db matched before, or there're no xrefs at all).