Package org.biopax.paxtools.pattern.util

Class AdjacencyMatrix

java.lang.Object

org.biopax.paxtools.pattern.util.AdjacencyMatrix

public class AdjacencyMatrix
extends Object

Adjacency matrix representation of a graph.

Author:

Ozgun Babur

Field Summary

Fields

Modifier and Type	Field	Description
boolean[][]	matrix	Edges matrix.
String[]	names	Unique node names.

Constructor Summary

Constructors

Constructor	Description
AdjacencyMatrix(boolean[][] matrix, List<String> namesList)	Constructor with contents.

Method Summary

Modifier and Type	Method	Description
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Details

names

public String[] names

Unique node names.

matrix

public boolean[][] matrix

Edges matrix. First index is source, second index is target. The matrix should be symmetrical if the graph is undirected.

Constructor Details

AdjacencyMatrix

public AdjacencyMatrix(boolean[][] matrix,
 List<String> namesList)

Constructor with contents.

Parameters:

matrix - edges

namesList - nodes

Method Details

toString

public String toString()

Overrides:

toString in class Object