Uses of Enum Class
org.biopax.paxtools.pattern.util.RelType

Packages that use RelType

Package	Description
org.biopax.paxtools.pattern.constraint	Package for constraints.
org.biopax.paxtools.pattern.util	Package for several utility classes.

Uses of RelType in org.biopax.paxtools.pattern.constraint

Methods in org.biopax.paxtools.pattern.constraint with parameters of type RelType

Modifier and Type	Method	Description
protected Set<PhysicalEntity>	ConstraintAdapter.getConvParticipants(Conversion conv, RelType type)	Gets input ot output participants of the Conversion.
static Constraint	ConBox.simplePEToConv(RelType type)	From simple PhysicalEntity to related Conversion.

Constructors in org.biopax.paxtools.pattern.constraint with parameters of type RelType

Modifier	Constructor	Description
	ConversionSide(ConversionSide.Type type, Blacklist blacklist, RelType relType)	Constructor.
	Participant(RelType type)	Constructor with parameters.
	Participant(RelType type, boolean considerControl)	Constructor with parameters.
	Participant(RelType type, boolean considerControl, boolean considerPathway)	Constructor with parameters.
	Participant(RelType type, Blacklist blacklist)	Constructor with parameters.
	Participant(RelType type, Blacklist blacklist, boolean considerControl)	Constructor with parameters.
	Participant(RelType type, Blacklist blacklist, boolean considerControl, boolean considerPathway)	Constructor with parameters.
	ParticipatesInConv(RelType type)	Constructor with parameters.
	ParticipatesInConv(RelType type, Blacklist blacklist)	Constructor with parameters.
	RelatedControl(RelType peType)	Constructor with the relation type between PhysicalEntity and Conversion.
	RelatedControl(RelType peType, Blacklist blacklist)	Constructor with the relation type between PhysicalEntity and Conversion, and the blacklist.

Uses of RelType in org.biopax.paxtools.pattern.util

Methods in org.biopax.paxtools.pattern.util that return RelType

Modifier and Type	Method	Description
RelType	Blacklist.getContext(String id)	Gets the context of the ubiquity of the ID.
static RelType	RelType.valueOf(String name)	Returns the enum constant of this class with the specified name.
static RelType[]	RelType.values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods in org.biopax.paxtools.pattern.util with parameters of type RelType

Modifier and Type	Method	Description
void	Blacklist.addEntry(String id, int score, RelType context)	Adds a new blacklisted ID.
Set<PhysicalEntity>	Blacklist.getNonUbiques(Set<PhysicalEntity> entities, RelType ctx)	Gets the non-ubiquitous physical entities in the given set and in the given context.
Collection<SmallMolecule>	Blacklist.getUbiques(Set<PhysicalEntity> entities, RelType context)	Gets the ubiquitous small molecules among the given set and in the given context.
boolean	Blacklist.isUbique(PhysicalEntity pe, Conversion conv, ConversionDirectionType dir, RelType context)	Checks if the given entity is blacklisted for the given Conversion assuming the Conversion flows towards the given direction, and the entity is in given context.