Package org.biopax.paxtools.pattern.miner

Enum Class SIFEnum

java.lang.Object
java.lang.Enum<SIFEnum>
org.biopax.paxtools.pattern.miner.SIFEnum
All Implemented Interfaces:
Serializable, Comparable<SIFEnum>, Constable, SIFType
public enum SIFEnum extends Enum<SIFEnum> implements SIFType
Enum for representing supported SIF edge types.
Author:
Ozgun Babur

  • Enum Constant Details

    • CONTROLS_STATE_CHANGE_OF

      public static final SIFEnum CONTROLS_STATE_CHANGE_OF

    • CONTROLS_TRANSPORT_OF

      public static final SIFEnum CONTROLS_TRANSPORT_OF

    • CONTROLS_PHOSPHORYLATION_OF

      public static final SIFEnum CONTROLS_PHOSPHORYLATION_OF

    • CONTROLS_EXPRESSION_OF

      public static final SIFEnum CONTROLS_EXPRESSION_OF

    • CATALYSIS_PRECEDES

      public static final SIFEnum CATALYSIS_PRECEDES

    • IN_COMPLEX_WITH

      public static final SIFEnum IN_COMPLEX_WITH

    • INTERACTS_WITH

      public static final SIFEnum INTERACTS_WITH

    • NEIGHBOR_OF

      public static final SIFEnum NEIGHBOR_OF

    • CONSUMPTION_CONTROLLED_BY

      public static final SIFEnum CONSUMPTION_CONTROLLED_BY

    • CONTROLS_PRODUCTION_OF

      public static final SIFEnum CONTROLS_PRODUCTION_OF

    • CONTROLS_TRANSPORT_OF_CHEMICAL

      public static final SIFEnum CONTROLS_TRANSPORT_OF_CHEMICAL

    • CHEMICAL_AFFECTS

      public static final SIFEnum CHEMICAL_AFFECTS

    • REACTS_WITH

      public static final SIFEnum REACTS_WITH

    • USED_TO_PRODUCE

      public static final SIFEnum USED_TO_PRODUCE

  • Method Details

    • values

      public static SIFEnum[] values()
      Returns an array containing the constants of this enum class, in the order they are declared.
      Returns:
      an array containing the constants of this enum class, in the order they are declared

    • valueOf

      public static SIFEnum valueOf(String name)
      Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)
      Parameters:
      name - the name of the enum constant to be returned.
      Returns:
      the enum constant with the specified name
      Throws:
      IllegalArgumentException - if this enum class has no constant with the specified name
      NullPointerException - if the argument is null

    • getTag

      public String getTag()
      Tag of a SIF type is derived from the enum name.
      Specified by:
      getTag in interface SIFType
      Returns:
      tag

    • isDirected

      public boolean isDirected()
      Asks if the edge is directed.
      Specified by:
      isDirected in interface SIFType
      Returns:
      true if directed

    • getDescription

      public String getDescription()
      Gets the description of the SIF type.
      Specified by:
      getDescription in interface SIFType
      Returns:
      description

    • getMiners

      public List<Class<? extends SIFMiner>> getMiners()
      Description copied from interface: SIFType
      Gets the list of SIFMiner classes that can search this type of SIF edge in a BioPAX model.
      Specified by:
      getMiners in interface SIFType
      Returns:
      SIF miners

    • typeOf

      public static SIFEnum typeOf(String tag)