Uses of Interface
org.biopax.paxtools.pattern.miner.Miner

Packages that use Miner

Package	Description
org.biopax.paxtools.pattern.miner	Package for pattern miner utility.

Uses of Miner in org.biopax.paxtools.pattern.miner

Subinterfaces of Miner in org.biopax.paxtools.pattern.miner

Modifier and Type	Interface	Description
interface	SIFMiner	This interface tells that the miner supports SIF output.

Classes in org.biopax.paxtools.pattern.miner that implement Miner

Modifier and Type	Class	Description
class	AbstractSIFMiner	Base class for SIF Miners.
class	CatalysisPrecedesMiner	Miner for the catalysis-precedes pattern.
class	ChemicalAffectsThroughBindingMiner	Miner for the chemical-affects-protein pattern.
class	ChemicalAffectsThroughControlMiner	Miner for the chemical-affects-protein pattern.
class	ConsumptionControlledByMiner	Miner for the consumption-controlled-by pattern.
class	ControlsDegradationIndirectMiner	Yet another miner for the controls-degradation pattern.
class	ControlsExpressionMiner	Miner for the transcriptional regulation pattern.
class	ControlsExpressionWithConvMiner	Miner for the transcriptional regulation pattern, modeled using Conversion.
class	ControlsPhosphorylationMiner	Miner for the controls-phosphorylation pattern.
class	ControlsProductionOfMiner	Miner for the controls-production-of pattern.
class	ControlsStateChangeDetailedMiner	Miner for the controls-state-change-detailed pattern.
class	ControlsStateChangeOfMiner	Miner for the controls-state-change pattern.
class	ControlsTransportMiner	Miner for the controls-transport pattern.
class	ControlsTransportOfChemicalMiner	Miner for the controls-transport-of-chemical pattern.
class	CSCOBothControllerAndParticipantMiner	Miner for the controls-state-change pattern.
class	CSCOButIsParticipantMiner	Miner for the controls-state-change pattern.
class	CSCOThroughBindingSmallMoleculeMiner	Miner for the controls-state-change pattern.
class	CSCOThroughControllingSmallMoleculeMiner	Miner for the controls-state-change pattern.
class	CSCOThroughDegradationMiner	Miner for the degradation pattern.
class	DirectedRelationMiner	Miner for the directed relations between proteins.
class	InComplexWithMiner	Miner for the degradation pattern.
class	InteractsWithMiner	Miner for the "interacts-with" relation.
class	MinerAdapter	Adapter class for a miner.
class	NeighborOfMiner	Miner for the "neighbor-of" relation.
class	ReactsWithMiner	Miner for the "reacts-with" relation.
class	RelatedGenesOfInteractionsMiner	Miner for the related genes (participant or controller) of interactions.
class	UbiquitousIDMiner	Miner for getting ubiquitous small molecules in a model.
class	UsedToProduceMiner	Miner for the "used-for-production-of" relation.

Constructors in org.biopax.paxtools.pattern.miner with parameters of type Miner

Modifier	Constructor	Description
	Dialog(Miner... miners)	Constructor for the dialog.