Package org.biopax.paxtools.pattern.constraint

Class HasAnID

java.lang.Object

org.biopax.paxtools.pattern.constraint.ConstraintAdapter

org.biopax.paxtools.pattern.constraint.HasAnID

All Implemented Interfaces:

Constraint

public class HasAnID
extends ConstraintAdapter

Checks if the element has a valid ID.

Author:

Ozgun Babur

Field Summary

Fields inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

blacklist, size

Constructor Summary

Constructors

Constructor	Description
HasAnID(IDFetcher fetcher, Map<BioPAXElement,Set<String>> idMap)	Constructor with the ID fetcher.

Method Summary

Modifier and Type	Method	Description
int	getVariableSize()	Returns 1.
boolean	satisfies(Match match, int... ind)	Checks if the element has one of the desired IDs.

Methods inherited from class org.biopax.paxtools.pattern.constraint.ConstraintAdapter

assertIndLength, canGenerate, convertStepDirection, findDirectionInCatalysis, findDirectionInPathways, generate, getCatalysisDirection, getControlChain, getConvParticipants, getDirection, getDirection, getDirection, getDirection, setSize

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

HasAnID

public HasAnID(IDFetcher fetcher,
 Map<BioPAXElement,Set<String>> idMap)

Constructor with the ID fetcher.

Parameters:

fetcher - ID generator

idMap - map of IDs

Method Details

getVariableSize

public int getVariableSize()

Returns 1.

Specified by:

getVariableSize in interface Constraint

Overrides:

getVariableSize in class ConstraintAdapter

Returns:

1

satisfies

public boolean satisfies(Match match,
 int... ind)

Checks if the element has one of the desired IDs.

Specified by:

satisfies in interface Constraint

Overrides:

satisfies in class ConstraintAdapter

Parameters:

match - current pattern match

ind - mapped indices

Returns:

true if the ID is in the list