Package org.biopax.paxtools.pattern.example

Class DeltaFeatureExtractor

java.lang.Object

org.biopax.paxtools.pattern.example.DeltaFeatureExtractor

public class DeltaFeatureExtractor
extends Object

This class goes over the state change pattern results and writes down the gained and lost modifications through these directed relations. Do not forget to allocate a large memory while running this example (like -Xmx8G).

Author:

Ozgun Babur

Constructor Summary

Constructors

Constructor	Description
DeltaFeatureExtractor()

Method Summary

Modifier and Type	Method	Description
static void	main(String[] args)
void	mineAndCollect(Model model)
void	setBlacklist(Blacklist blacklist)
void	writeResults(String filename)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

DeltaFeatureExtractor

public DeltaFeatureExtractor()

Method Details

main

public static void main(String[] args)
                 throws IOException

Throws:

IOException

setBlacklist

public void setBlacklist(Blacklist blacklist)

mineAndCollect

public void mineAndCollect(Model model)

writeResults

public void writeResults(String filename)
                  throws IOException

Throws:

IOException