Class ControlsProductionOfMiner
java.lang.Object
org.biopax.paxtools.pattern.miner.MinerAdapter
org.biopax.paxtools.pattern.miner.AbstractSIFMiner
org.biopax.paxtools.pattern.miner.ConsumptionControlledByMiner
org.biopax.paxtools.pattern.miner.ControlsProductionOfMiner
Miner for the controls-production-of pattern.
- Author:
- Ozgun Babur
-
Field Summary
Fields inherited from class org.biopax.paxtools.pattern.miner.MinerAdapter
blacklist, description, idFetcher, idMap, name -
Constructor Summary
ConstructorsConstructorDescriptionConstructor that sets name, description and type. -
Method Summary
Modifier and TypeMethodDescriptionConstructs the pattern.Gets the label of the source node.Gets the label of the target node.Methods inherited from class org.biopax.paxtools.pattern.miner.ConsumptionControlledByMiner
getMediatorLabels, getSourcePELabels, getTargetPELabelsMethods inherited from class org.biopax.paxtools.pattern.miner.AbstractSIFMiner
getSIFType, setType, writeResultMethods inherited from class org.biopax.paxtools.pattern.miner.MinerAdapter
concat, createSIFInteraction, fetchIDs, getCellularLocations, getChain, getCompoundName, getDeltaCompartments, getDeltaModifications, getDescription, getGeneSymbol, getGeneSymbol, getHeader, getIdentifiers, getIdMap, getModifications, getModifications, getModificationTerm, getName, getPattern, getPositionInString, getPositionStart, getRelationType, getUniprotNameForHuman, getUniprotNameForHuman, getValue, isInhibition, labeledInactive, removeCommon, setBlacklist, setDescription, setIDFetcher, setIdMap, setName, sign, sign, toString, toStringSet, writeResultAsSIF, writeResultDetailed, writeSIFsUsingSIFFrameworkMethods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, waitMethods inherited from interface org.biopax.paxtools.pattern.miner.Miner
getDescription, getName, getPatternMethods inherited from interface org.biopax.paxtools.pattern.miner.SIFMiner
createSIFInteraction, setBlacklist, setIDFetcher
-
Constructor Details
-
ControlsProductionOfMiner
public ControlsProductionOfMiner()Constructor that sets name, description and type.
-
-
Method Details
-
constructPattern
Constructs the pattern.- Overrides:
constructPatternin classConsumptionControlledByMiner- Returns:
- pattern
-
getSourceLabel
Description copied from interface:SIFMinerGets the label of the source node.- Specified by:
getSourceLabelin interfaceSIFMiner- Overrides:
getSourceLabelin classConsumptionControlledByMiner- Returns:
- source label
-
getTargetLabel
Description copied from interface:SIFMinerGets the label of the target node.- Specified by:
getTargetLabelin interfaceSIFMiner- Overrides:
getTargetLabelin classConsumptionControlledByMiner- Returns:
- target label
-