Package org.biopax.paxtools.pattern.miner

Class ControlsProductionOfMiner

java.lang.Object

org.biopax.paxtools.pattern.miner.MinerAdapter

org.biopax.paxtools.pattern.miner.AbstractSIFMiner

org.biopax.paxtools.pattern.miner.ConsumptionControlledByMiner

org.biopax.paxtools.pattern.miner.ControlsProductionOfMiner

All Implemented Interfaces:

Miner, SIFMiner

public class ControlsProductionOfMiner
extends ConsumptionControlledByMiner

Miner for the controls-production-of pattern.

Author:

Ozgun Babur

Field Summary

Fields inherited from class org.biopax.paxtools.pattern.miner.MinerAdapter

blacklist, description, idFetcher, idMap, name

Constructor Summary

Constructors

Constructor	Description
ControlsProductionOfMiner()	Constructor that sets name, description and type.

Method Summary

Modifier and Type	Method	Description
Pattern	constructPattern()	Constructs the pattern.
String	getSourceLabel()	Gets the label of the source node.
String	getTargetLabel()	Gets the label of the target node.

Methods inherited from class org.biopax.paxtools.pattern.miner.ConsumptionControlledByMiner

getMediatorLabels, getSourcePELabels, getTargetPELabels

Methods inherited from class org.biopax.paxtools.pattern.miner.AbstractSIFMiner

getSIFType, setType, writeResult

Methods inherited from class org.biopax.paxtools.pattern.miner.MinerAdapter

concat, createSIFInteraction, fetchIDs, getCellularLocations, getChain, getCompoundName, getDeltaCompartments, getDeltaModifications, getDescription, getGeneSymbol, getGeneSymbol, getHeader, getIdentifiers, getIdMap, getModifications, getModifications, getModificationTerm, getName, getPattern, getPositionInString, getPositionStart, getRelationType, getUniprotNameForHuman, getUniprotNameForHuman, getValue, isInhibition, labeledInactive, removeCommon, setBlacklist, setDescription, setIDFetcher, setIdMap, setName, sign, sign, toString, toStringSet, writeResultAsSIF, writeResultDetailed, writeSIFsUsingSIFFramework

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.pattern.miner.Miner

getDescription, getName, getPattern

Methods inherited from interface org.biopax.paxtools.pattern.miner.SIFMiner

createSIFInteraction, setBlacklist, setIDFetcher

Constructor Details

ControlsProductionOfMiner

public ControlsProductionOfMiner()

Constructor that sets name, description and type.

Method Details

constructPattern

public Pattern constructPattern()

Constructs the pattern.

Overrides:

constructPattern in class ConsumptionControlledByMiner

Returns:

pattern

getSourceLabel

public String getSourceLabel()

Description copied from interface: SIFMiner

Gets the label of the source node.

Specified by:

getSourceLabel in interface SIFMiner

Overrides:

getSourceLabel in class ConsumptionControlledByMiner

Returns:

source label

getTargetLabel

public String getTargetLabel()

Description copied from interface: SIFMiner

Gets the label of the target node.

Specified by:

getTargetLabel in interface SIFMiner

Overrides:

getTargetLabel in class ConsumptionControlledByMiner

Returns:

target label