Package org.biopax.paxtools.examples

Class PathwayGenesExtractor

java.lang.Object

org.biopax.paxtools.examples.PathwayGenesExtractor

All Implemented Interfaces:

Visitor

public class PathwayGenesExtractor
extends Object
implements Visitor

Prints all the genes (aka proteins) in the L2 pathway and sub-pathways (*conditions apply), and also - trace where they come from. * Note: it doesn't traverse the 'NEXT-STEP' property! (as doing so may take you beyond the pathway of interest)

Author:

rodch

Constructor Summary

Constructors

Constructor	Description
PathwayGenesExtractor(pathway pw)

Method Summary

Modifier and Type	Method	Description
static void	main(String[] args)
void	visit(BioPAXElement domain1, Object range, Model model, PropertyEditor editor)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

PathwayGenesExtractor

public PathwayGenesExtractor(pathway pw)

Method Details

main

public static void main(String[] args)
                 throws FileNotFoundException

Throws:

FileNotFoundException

visit

public void visit(BioPAXElement domain1,
 Object range,
 Model model,
 PropertyEditor editor)

Specified by:

visit in interface Visitor