org.biopax.paxtools.impl.level3

Class ProcessImpl

java.lang.Object

org.biopax.paxtools.impl.BioPAXElementImpl

org.biopax.paxtools.impl.level3.L3ElementImpl

org.biopax.paxtools.impl.level3.XReferrableImpl

org.biopax.paxtools.impl.level3.NamedImpl

org.biopax.paxtools.impl.level3.EntityImpl

org.biopax.paxtools.impl.level3.ProcessImpl

All Implemented Interfaces:

Serializable, Cloneable, BioPAXElement, Entity, Level3Element, Named, Observable, Process, XReferrable

Direct Known Subclasses:

InteractionImpl, PathwayImpl

@Entity
public abstract class ProcessImpl
extends EntityImpl
implements Process

See Also:

Serialized Form

Field Summary

Fields inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

FIELD_AVAILABILITY, FIELD_COMMENT, FIELD_DATASOURCE, FIELD_ECNUMBER, FIELD_KEYWORD, FIELD_NAME, FIELD_ORGANISM, FIELD_PATHWAY, FIELD_SEQUENCE, FIELD_TERM, FIELD_XREFDB, FIELD_XREFID, FILTER_BY_DATASOURCE, FILTER_BY_ORGANISM

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

Constructors

Constructor and Description
ProcessImpl()

Method Summary

Modifier and Type	Method and Description
Set<Control>	getControlledOf()
Set<Pathway>	getPathwayComponentOf()
Set<PathwayStep>	getStepProcessOf()
protected void	setControlledOf(Set<Control> controlledOf)
protected void	setPathwayComponentOf(Set<Pathway> pathwayComponentOf)
protected void	setStepProcessOf(Set<PathwayStep> stepProcessOf)

Methods inherited from class org.biopax.paxtools.impl.level3.EntityImpl

addAvailability, addDataSource, addEvidence, getAvailability, getDataSource, getEvidence, getParticipantOf, removeAvailability, removeDataSource, removeEvidence, semanticallyEquivalent, setAvailability, setDataSource, setEvidence, setParticipantOf

Methods inherited from class org.biopax.paxtools.impl.level3.NamedImpl

addName, getDisplayName, getDisplayNameX, getName, getStandardName, getStandardNameX, removeName, setDisplayName, setDisplayNameX, setName, setStandardName, setStandardNameX

Methods inherited from class org.biopax.paxtools.impl.level3.XReferrableImpl

addXref, equivalenceCode, getXref, removeXref, setXref

Methods inherited from class org.biopax.paxtools.impl.level3.L3ElementImpl

addComment, getComment, getDatasources, getKeywords, getOrganisms, getParentPathways, removeComment, setComment

Methods inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

equals, getAnnotations, getPk, getRDFId, hashCode, isEquivalent, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level3.Entity

addAvailability, addDataSource, getAvailability, getDataSource, getParticipantOf, removeAvailability, removeDataSource

Methods inherited from interface org.biopax.paxtools.model.level3.Observable

addEvidence, getEvidence, removeEvidence

Methods inherited from interface org.biopax.paxtools.model.level3.Named

addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setName, setStandardName

Methods inherited from interface org.biopax.paxtools.model.level3.XReferrable

addXref, getXref, removeXref

Methods inherited from interface org.biopax.paxtools.model.level3.Level3Element

addComment, getComment, removeComment

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getModelInterface, getRDFId, isEquivalent

Constructor Detail

ProcessImpl

public ProcessImpl()

Method Detail

getPathwayComponentOf

public Set<Pathway> getPathwayComponentOf()

Specified by:

getPathwayComponentOf in interface Process

getStepProcessOf

public Set<PathwayStep> getStepProcessOf()

Specified by:

getStepProcessOf in interface Process

getControlledOf

public Set<Control> getControlledOf()

Specified by:

getControlledOf in interface Process

setControlledOf

protected void setControlledOf(Set<Control> controlledOf)

setStepProcessOf

protected void setStepProcessOf(Set<PathwayStep> stepProcessOf)

setPathwayComponentOf

protected void setPathwayComponentOf(Set<Pathway> pathwayComponentOf)