org.biopax.paxtools.impl.level3

Class RelationshipXrefImpl

java.lang.Object

org.biopax.paxtools.impl.BioPAXElementImpl

org.biopax.paxtools.impl.level3.L3ElementImpl

org.biopax.paxtools.impl.level3.XrefImpl

org.biopax.paxtools.impl.level3.RelationshipXrefImpl

All Implemented Interfaces:

Serializable, Cloneable, BioPAXElement, Level3Element, RelationshipXref, UtilityClass, Xref

@Entity
 @Indexed
public class RelationshipXrefImpl
extends XrefImpl
implements RelationshipXref

See Also:

Serialized Form

Field Summary

Fields inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

FIELD_AVAILABILITY, FIELD_COMMENT, FIELD_DATASOURCE, FIELD_ECNUMBER, FIELD_KEYWORD, FIELD_NAME, FIELD_ORGANISM, FIELD_PATHWAY, FIELD_SEQUENCE, FIELD_TERM, FIELD_XREFDB, FIELD_XREFID, FILTER_BY_DATASOURCE, FILTER_BY_ORGANISM

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

Constructors

Constructor and Description
RelationshipXrefImpl()

Method Summary

Modifier and Type	Method and Description
Class<? extends RelationshipXref>	getModelInterface() This method returns the actual model interface that a class implements.
RelationshipTypeVocabulary	getRelationshipType() Definition:A controlled vocabulary term that defines the type of relationship that this xref defines.
protected boolean	semanticallyEquivalent(BioPAXElement other)
void	setRelationshipType(RelationshipTypeVocabulary relationshipType) Definition:A controlled vocabulary term that defines the type of relationship that this xref defines.

Methods inherited from class org.biopax.paxtools.impl.level3.XrefImpl

equivalenceCode, getDb, getDbVersion, getId, getIdVersion, getIdx, getXrefOf, setDb, setDbVersion, setId, setIdVersion, setIdx, setXrefOf, toString

Methods inherited from class org.biopax.paxtools.impl.level3.L3ElementImpl

addComment, getComment, getDatasources, getKeywords, getOrganisms, getParentPathways, removeComment, setComment

Methods inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

equals, getAnnotations, getPk, getRDFId, hashCode, isEquivalent

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level3.Xref

getDb, getDbVersion, getId, getIdVersion, getXrefOf, setDb, setDbVersion, setId, setIdVersion

Methods inherited from interface org.biopax.paxtools.model.level3.Level3Element

addComment, getComment, removeComment

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getRDFId, isEquivalent

Constructor Detail

RelationshipXrefImpl

public RelationshipXrefImpl()

Method Detail

getModelInterface

public Class<? extends RelationshipXref> getModelInterface()

Description copied from interface: BioPAXElement

This method returns the actual model interface that a class implements.

Specified by:

getModelInterface in interface BioPAXElement

Returns:

an interface from org.biopax.paxtools.model package corresponding to a BioPAX class.

getRelationshipType

public RelationshipTypeVocabulary getRelationshipType()

Description copied from interface: RelationshipXref

Definition:A controlled vocabulary term that defines the type of relationship that this xref defines. Usage: There is currently no controlled vocabulary of relationship types for BioPAX, although one will be created in the future as the usage of this property increases.

Specified by:

getRelationshipType in interface RelationshipXref

Returns:

The type of relationship

setRelationshipType

public void setRelationshipType(RelationshipTypeVocabulary relationshipType)

Description copied from interface: RelationshipXref

Definition:A controlled vocabulary term that defines the type of relationship that this xref defines. Usage: There is currently no controlled vocabulary of relationship types for BioPAX, although one will be created in the future as the usage of this property increases.

Specified by:

setRelationshipType in interface RelationshipXref

Parameters:

relationshipType - The type of relationship that this xref defines

semanticallyEquivalent

protected boolean semanticallyEquivalent(BioPAXElement other)

Overrides:

semanticallyEquivalent in class XrefImpl