org.biopax.paxtools.impl.level3

Class ScoreImpl

java.lang.Object

org.biopax.paxtools.impl.BioPAXElementImpl

org.biopax.paxtools.impl.level3.L3ElementImpl

org.biopax.paxtools.impl.level3.XReferrableImpl

org.biopax.paxtools.impl.level3.ScoreImpl

All Implemented Interfaces:

Serializable, Cloneable, BioPAXElement, Level3Element, Score, UtilityClass, XReferrable

@Entity
 @Indexed
public class ScoreImpl
extends XReferrableImpl
implements Score

See Also:

Serialized Form

Field Summary

Fields inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

FIELD_AVAILABILITY, FIELD_COMMENT, FIELD_DATASOURCE, FIELD_ECNUMBER, FIELD_KEYWORD, FIELD_NAME, FIELD_ORGANISM, FIELD_PATHWAY, FIELD_SEQUENCE, FIELD_TERM, FIELD_XREFDB, FIELD_XREFID, FILTER_BY_DATASOURCE, FILTER_BY_ORGANISM

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

Constructors

Constructor and Description
ScoreImpl()

Method Summary

Modifier and Type	Method and Description
Class<? extends Score>	getModelInterface() This method returns the actual model interface that a class implements.
Provenance	getScoreSource() This property defines the source of the scoring methodology.
String	getValue() This property defines the value of the score.
void	setScoreSource(Provenance scoreSource) This property defines the source of the scoring methodology.
void	setValue(String value) This property defines the value of the score.

Methods inherited from class org.biopax.paxtools.impl.level3.XReferrableImpl

addXref, equivalenceCode, getXref, removeXref, setXref

Methods inherited from class org.biopax.paxtools.impl.level3.L3ElementImpl

addComment, getComment, getDatasources, getKeywords, getOrganisms, getParentPathways, removeComment, setComment

Methods inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

equals, getAnnotations, getPk, getRDFId, hashCode, isEquivalent, semanticallyEquivalent, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.level3.XReferrable

addXref, getXref, removeXref

Methods inherited from interface org.biopax.paxtools.model.level3.Level3Element

addComment, getComment, removeComment

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getRDFId, isEquivalent

Constructor Detail

ScoreImpl

public ScoreImpl()

Method Detail

getModelInterface

public Class<? extends Score> getModelInterface()

Description copied from interface: BioPAXElement

This method returns the actual model interface that a class implements.

Specified by:

getModelInterface in interface BioPAXElement

Returns:

an interface from org.biopax.paxtools.model package corresponding to a BioPAX class.

getValue

@Field(name="keyword",
       store=YES,
       analyze=YES)
 @Boost(value=1.100000023841858f)
public String getValue()

Description copied from interface: Score

This property defines the value of the score. This can be a numerical or categorical value.

Specified by:

getValue in interface Score

Returns:

Numerical or categorical value of the score

setValue

public void setValue(String value)

Description copied from interface: Score

This property defines the value of the score. This can be a numerical or categorical value.

Specified by:

setValue in interface Score

Parameters:

value - Numerical or categorical value of the score

getScoreSource

public Provenance getScoreSource()

Description copied from interface: Score

This property defines the source of the scoring methodology.

Specified by:

getScoreSource in interface Score

Returns:

A publication or web site describing the scoring methodology and the range of values.

setScoreSource

public void setScoreSource(Provenance scoreSource)

Description copied from interface: Score

This property defines the source of the scoring methodology.

Specified by:

setScoreSource in interface Score

Parameters:

scoreSource - publication or web site describing the scoring methodology and the range of values.