org.biopax.paxtools.model.level3

Interface NucleicAcidRegionReference

All Superinterfaces:

BioPAXElement, Cloneable, EntityReference, Level3Element, Named, NucleicAcidReference, Observable, SequenceEntityReference, Serializable, UtilityClass, XReferrable

All Known Subinterfaces:

DnaRegionReference, RnaRegionReference

All Known Implementing Classes:

DnaRegionReferenceImpl, NucleicAcidRegionReferenceImpl, RnaRegionReferenceImpl

public interface NucleicAcidRegionReference
extends NucleicAcidReference

Field Summary

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Method Summary

Modifier and Type	Method and Description
void	addRegionType(SequenceRegionVocabulary regionType)
SequenceLocation	getAbsoluteRegion()
Set<SequenceRegionVocabulary>	getRegionType()
Set<NucleicAcidReference>	getSubRegionOf()
void	removeRegionType(SequenceRegionVocabulary regionType)
void	setAbsoluteRegion(SequenceLocation absoluteRegion)

Methods inherited from interface org.biopax.paxtools.model.level3.NucleicAcidReference

addSubRegion, getSubRegion, removeSubRegion

Methods inherited from interface org.biopax.paxtools.model.level3.SequenceEntityReference

getOrganism, getSequence, setOrganism, setSequence

Methods inherited from interface org.biopax.paxtools.model.level3.EntityReference

addEntityFeature, addEntityReferenceType, addMemberEntityReference, getEntityFeature, getEntityReferenceOf, getEntityReferenceType, getMemberEntityReference, getMemberEntityReferenceOf, removeEntityFeature, removeEntityReferenceType, removeMemberEntityReference

Methods inherited from interface org.biopax.paxtools.model.level3.Named

addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setName, setStandardName

Methods inherited from interface org.biopax.paxtools.model.level3.XReferrable

addXref, getXref, removeXref

Methods inherited from interface org.biopax.paxtools.model.level3.Level3Element

addComment, getComment, removeComment

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getModelInterface, getRDFId, isEquivalent

Methods inherited from interface org.biopax.paxtools.model.level3.Observable

addEvidence, getEvidence, removeEvidence

Method Detail

getSubRegionOf

Set<NucleicAcidReference> getSubRegionOf()

getAbsoluteRegion

SequenceLocation getAbsoluteRegion()

setAbsoluteRegion

void setAbsoluteRegion(SequenceLocation absoluteRegion)

getRegionType

Set<SequenceRegionVocabulary> getRegionType()

addRegionType

void addRegionType(SequenceRegionVocabulary regionType)

removeRegionType

void removeRegionType(SequenceRegionVocabulary regionType)