Uses of Interface
org.biopax.paxtools.model.level2.conversion

Packages that use conversion

Package	Description
org.biopax.paxtools.controller	This package contains various methods and algorithms for traversing and manipulating the model.
org.biopax.paxtools.model.level2	This package contains the interfaces that maps to the BioPAX level 2 specification.

Uses of conversion in org.biopax.paxtools.controller

Methods in org.biopax.paxtools.controller that return conversion

Modifier and Type	Method and Description
conversion	ConversionScore.getConversion1()
conversion	ConversionScore.getConversion2()

Constructors in org.biopax.paxtools.controller with parameters of type conversion

Constructor and Description
ConversionScore(conversion conv1, conversion conv2, Double score, Map<physicalEntityParticipant,physicalEntityParticipant> pepMap, boolean reverseMatch)

Uses of conversion in org.biopax.paxtools.model.level2

Subinterfaces of conversion in org.biopax.paxtools.model.level2

Modifier and Type	Interface and Description
interface	biochemicalReaction A conversion interaction in which one or more entities (substrates) undergo ovalent changes to become one or more other entities (products).
interface	complexAssembly A conversion interaction in which a set of physical entities, at least one being a macromolecule (e.g.
interface	transport
interface	transportWithBiochemicalReaction