org.biopax.paxtools.model.level2

Interface sequenceEntity

All Superinterfaces:

BioPAXElement, Cloneable, entity, InteractionParticipant, Level2Element, physicalEntity, Serializable, XReferrable

All Known Subinterfaces:

dna, protein, rna

public interface sequenceEntity
extends physicalEntity

User: root Date: Aug 7, 2006 Time: 4:51:19 PM_DOT

Field Summary

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Method Summary

Modifier and Type	Method and Description
bioSource	getORGANISM()
String	getSEQUENCE()
void	setORGANISM(bioSource ORGANISM)
void	setSEQUENCE(String SEQUENCE)

Methods inherited from interface org.biopax.paxtools.model.level2.physicalEntity

addPHYSICAL_ENTITYof, getAllInteractions, getAllInteractions, isPHYSICAL_ENTITYof, removePHYSICAL_ENTITYof

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, findCommonPublications, findCommonRelationships, findCommonUnifications, getXREF, removeXREF, setXREF

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.Level2Element

addCOMMENT, getCOMMENT, removeCOMMENT, setCOMMENT

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getModelInterface, getUri, isEquivalent

Method Detail

getORGANISM

bioSource getORGANISM()

getSEQUENCE

String getSEQUENCE()

setORGANISM

void setORGANISM(bioSource ORGANISM)

setSEQUENCE

void setSEQUENCE(String SEQUENCE)