org.biopax.paxtools.model.level3

Interface TemplateReaction

All Superinterfaces:

BioPAXElement, Cloneable, Entity, Interaction, Level3Element, Named, Observable, Process, Serializable, XReferrable

All Known Implementing Classes:

TemplateReactionImpl

public interface TemplateReaction
extends Interaction

Field Summary

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Method Summary

Modifier and Type	Method and Description
void	addProduct(PhysicalEntity product)
Set<PhysicalEntity>	getProduct()
NucleicAcid	getTemplate()
TemplateDirectionType	getTemplateDirection()
void	removeProduct(PhysicalEntity product)
void	setTemplate(NucleicAcid template)
void	setTemplateDirection(TemplateDirectionType templateD1nmirection)

Methods inherited from interface org.biopax.paxtools.model.level3.Interaction

addInteractionType, addParticipant, getInteractionType, getParticipant, removeInteractionType, removeParticipant

Methods inherited from interface org.biopax.paxtools.model.level3.Process

getControlledOf, getPathwayComponentOf, getStepProcessOf

Methods inherited from interface org.biopax.paxtools.model.level3.Entity

addAvailability, addDataSource, getAvailability, getDataSource, getParticipantOf, removeAvailability, removeDataSource

Methods inherited from interface org.biopax.paxtools.model.level3.Observable

addEvidence, getEvidence, removeEvidence

Methods inherited from interface org.biopax.paxtools.model.level3.Named

addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setName, setStandardName

Methods inherited from interface org.biopax.paxtools.model.level3.XReferrable

addXref, getXref, removeXref

Methods inherited from interface org.biopax.paxtools.model.level3.Level3Element

addComment, getComment, removeComment

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getModelInterface, getUri, isEquivalent

Method Detail

getProduct

Set<PhysicalEntity> getProduct()

addProduct

void addProduct(PhysicalEntity product)

removeProduct

void removeProduct(PhysicalEntity product)

getTemplate

NucleicAcid getTemplate()

setTemplate

void setTemplate(NucleicAcid template)

getTemplateDirection

TemplateDirectionType getTemplateDirection()

setTemplateDirection

void setTemplateDirection(TemplateDirectionType templateD1nmirection)