Uses of Interface
org.biopax.paxtools.model.level3.Conversion

Packages that use Conversion

Package	Description
org.biopax.paxtools.impl.level3	This package contains the default implementation for BioPAX Level 3.
org.biopax.paxtools.model.level3	This package contains the interfaces that maps classes defined in the BioPAX Level 3 specification.

Uses of Conversion in org.biopax.paxtools.impl.level3

Classes in org.biopax.paxtools.impl.level3 that implement Conversion

Modifier and Type	Class and Description
class	BiochemicalReactionImpl
class	ComplexAssemblyImpl
class	ConversionImpl
class	DegradationImpl
class	TransportImpl
class	TransportWithBiochemicalReactionImpl

Methods in org.biopax.paxtools.impl.level3 that return Conversion

Modifier and Type	Method and Description
Conversion	BiochemicalPathwayStepImpl.getStepConversion()

Methods in org.biopax.paxtools.impl.level3 that return types with arguments of type Conversion

Modifier and Type	Method and Description
Class<? extends Conversion>	ConversionImpl.getModelInterface()

Methods in org.biopax.paxtools.impl.level3 with parameters of type Conversion

Modifier and Type	Method and Description
void	BiochemicalPathwayStepImpl.setStepConversion(Conversion highLander)

Uses of Conversion in org.biopax.paxtools.model.level3

Subinterfaces of Conversion in org.biopax.paxtools.model.level3

Modifier and Type	Interface and Description
interface	BiochemicalReaction Definition: A conversion interaction in which one or more entities (substrates) undergo covalent changes to become one or more other entities (products).
interface	ComplexAssembly Definition: A conversion interaction in which a set of physical entities, at least one being a macromolecule (e.g.
interface	Degradation Definition: A conversion in which a pool of macromolecules are degraded into their elementary units.
interface	Transport
interface	TransportWithBiochemicalReaction

Methods in org.biopax.paxtools.model.level3 that return Conversion

Modifier and Type	Method and Description
Conversion	BiochemicalPathwayStep.getStepConversion() This method returns the central conversion of this BiochemicalPathwayStep.

Methods in org.biopax.paxtools.model.level3 with parameters of type Conversion

Modifier and Type	Method and Description
void	BiochemicalPathwayStep.setStepConversion(Conversion stepConversion) This method sets the conversion of this BiochemicalPathwayStep to the new Step_Conversion.