Uses of Class
org.biopax.paxtools.controller.IdFetcher

Packages that use IdFetcher

Package	Description
org.biopax.paxtools.controller	This package contains various methods and algorithms for traversing and manipulating the model.

Uses of IdFetcher in org.biopax.paxtools.controller

Methods in org.biopax.paxtools.controller that return IdFetcher

Modifier and Type	Method and Description
IdFetcher	IdFetcher.chemDbStartsWithOrEquals(String dbStartsWithOrEquals) Set to prefer collecting chemical IDs of such Xrefs where the small molecules db starts with or equals given string, ignoring case.
IdFetcher	IdFetcher.seqDbStartsWithOrEquals(String dbStartsWithOrEquals) Set to prefer collecting gene/sequence IDs of such Xrefs where the db starts with or equals given string, ignoring case.
IdFetcher	IdFetcher.useNameWhenNoDbMatch(boolean useNameWhenNoDbMatch) Set the flag to use the entity reference's names when no desired ID type can be found (none of xref.db matched before, or there're no xrefs at all).