Package org.biopax.paxtools.impl

Class MockFactory

java.lang.Object

org.biopax.paxtools.model.BioPAXFactory

org.biopax.paxtools.impl.MockFactory

public class MockFactory
extends BioPAXFactory

This factory returns decorated objects for testing.

Constructor Summary

Constructors

Constructor	Description
MockFactory(BioPAXLevel level)

Method Summary

Modifier and Type	Method	Description
void	bindArrays(String editor, BioPAXElement[] beans, BioPAXElement[] values)
void	bindArrays(ObjectPropertyEditor editor, BioPAXElement[] beans, BioPAXElement[] values)
void	bindInPairs(String editor, BioPAXElement... pairs)
void	bindInPairs(ObjectPropertyEditor editor, BioPAXElement... pairs)
<T extends BioPAXElement> T	create(Class<T> aClass, String uri)	Universal method that creates a new BioPAX object.
BioPAXElement	create(String localName, String uri)
<T extends BioPAXElement> T[]	create(Model model, Class<T> biopaxClass, int number)
<T extends BioPAXElement> T[]	create(Model model, Class<T> biopaxClass, int number, String pre)
ObjectPropertyEditor	editor(String property, Class<? extends BioPAXElement> clazz)
BioPAXLevel	getLevel()	Gets the level.
String	mapClassName(Class<? extends BioPAXElement> aClass)	Maps a BioPAX type (model interface) to the full-qualified class name of an implementing class.

Methods inherited from class org.biopax.paxtools.model.BioPAXFactory

canInstantiate, createModel, getImplClass

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

MockFactory

public MockFactory(BioPAXLevel level)

Method Details

create

public <T extends BioPAXElement> T create(Class<T> aClass,
 String uri)

Description copied from class: BioPAXFactory

Universal method that creates a new BioPAX object. (works with non-public, other package, implementations)

Overrides:

create in class BioPAXFactory

Type Parameters:

T - type

Parameters:

aClass - the class that corresponds to the BioPAX type

uri - absolute URI of the new BioPAX object

Returns:

new BioPAX object

create

public BioPAXElement create(String localName,
 String uri)

Overrides:

create in class BioPAXFactory

getLevel

public BioPAXLevel getLevel()

Description copied from class: BioPAXFactory

Gets the level.

Specified by:

getLevel in class BioPAXFactory

Returns:

the biopax level

mapClassName

public String mapClassName(Class<? extends BioPAXElement> aClass)

Description copied from class: BioPAXFactory

Maps a BioPAX type (model interface) to the full-qualified class name of an implementing class. BioPAX factories have to implement this method.

Specified by:

mapClassName in class BioPAXFactory

Parameters:

aClass - BioPAX type (model interface)

Returns:

full class name

create

public <T extends BioPAXElement> T[] create(Model model,
 Class<T> biopaxClass,
 int number,
 String pre)

create

public <T extends BioPAXElement> T[] create(Model model,
 Class<T> biopaxClass,
 int number)

bindInPairs

public void bindInPairs(ObjectPropertyEditor editor,
 BioPAXElement... pairs)

bindArrays

public void bindArrays(ObjectPropertyEditor editor,
 BioPAXElement[] beans,
 BioPAXElement[] values)

bindInPairs

public void bindInPairs(String editor,
 BioPAXElement... pairs)

bindArrays

public void bindArrays(String editor,
 BioPAXElement[] beans,
 BioPAXElement[] values)

editor

public ObjectPropertyEditor editor(String property,
 Class<? extends BioPAXElement> clazz)