Package org.biopax.paxtools.impl.level3

Class DnaReferenceImpl

java.lang.Object

org.biopax.paxtools.impl.BioPAXElementImpl

org.biopax.paxtools.impl.level3.L3ElementImpl

org.biopax.paxtools.impl.level3.XReferrableImpl

org.biopax.paxtools.impl.level3.NamedImpl

org.biopax.paxtools.impl.level3.EntityReferenceImpl

org.biopax.paxtools.impl.level3.SequenceEntityReferenceImpl

org.biopax.paxtools.impl.level3.NucleicAcidReferenceImpl

org.biopax.paxtools.impl.level3.DnaReferenceImpl

All Implemented Interfaces:

Serializable, Cloneable, BioPAXElement, DnaReference, EntityReference, Level3Element, Named, NucleicAcidReference, Observable, SequenceEntityReference, UtilityClass, XReferrable

public class DnaReferenceImpl
extends NucleicAcidReferenceImpl
implements DnaReference

See Also:

• Serialized Form

Field Summary

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Constructor Summary

Constructors

Constructor	Description
DnaReferenceImpl()

Method Summary

Modifier and Type	Method	Description
Class<? extends DnaReference>	getModelInterface()	This method returns the actual model interface that a class implements.

Methods inherited from class org.biopax.paxtools.impl.level3.NucleicAcidReferenceImpl

addSubRegion, getSubRegion, removeSubRegion

Methods inherited from class org.biopax.paxtools.impl.level3.SequenceEntityReferenceImpl

equivalenceCode, getOrganism, getSequence, semanticallyEquivalent, setOrganism, setSequence

Methods inherited from class org.biopax.paxtools.impl.level3.EntityReferenceImpl

addEntityFeature, addEntityReferenceType, addEvidence, addMemberEntityReference, getEntityFeature, getEntityReferenceOf, getEntityReferenceType, getEvidence, getMemberEntityReference, getMemberEntityReferenceOf, removeEntityFeature, removeEntityReferenceType, removeEvidence, removeMemberEntityReference

Methods inherited from class org.biopax.paxtools.impl.level3.NamedImpl

addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setName, setStandardName

Methods inherited from class org.biopax.paxtools.impl.level3.XReferrableImpl

addXref, getXref, removeXref, setXref

Methods inherited from class org.biopax.paxtools.impl.level3.L3ElementImpl

addComment, getComment, removeComment, setComment

Methods inherited from class org.biopax.paxtools.impl.BioPAXElementImpl

equals, getAnnotations, getUri, hashCode, isEquivalent, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getUri, isEquivalent

Methods inherited from interface org.biopax.paxtools.model.level3.EntityReference

addEntityFeature, addEntityReferenceType, addMemberEntityReference, getEntityFeature, getEntityReferenceOf, getEntityReferenceType, getMemberEntityReference, getMemberEntityReferenceOf, removeEntityFeature, removeEntityReferenceType, removeMemberEntityReference

Methods inherited from interface org.biopax.paxtools.model.level3.Level3Element

addComment, getComment, removeComment

Methods inherited from interface org.biopax.paxtools.model.level3.Named

addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setName, setStandardName

Methods inherited from interface org.biopax.paxtools.model.level3.NucleicAcidReference

addSubRegion, getSubRegion, removeSubRegion

Methods inherited from interface org.biopax.paxtools.model.level3.Observable

addEvidence, getEvidence, removeEvidence

Methods inherited from interface org.biopax.paxtools.model.level3.SequenceEntityReference

getOrganism, getSequence, setOrganism, setSequence

Methods inherited from interface org.biopax.paxtools.model.level3.XReferrable

addXref, getXref, removeXref

Constructor Details

DnaReferenceImpl

public DnaReferenceImpl()

Method Details

getModelInterface

public Class<? extends DnaReference> getModelInterface()

Description copied from interface: BioPAXElement

This method returns the actual model interface that a class implements.

Specified by:

getModelInterface in interface BioPAXElement

Overrides:

getModelInterface in class EntityReferenceImpl

Returns:

an interface from org.biopax.paxtools.model package corresponding to a BioPAX class.