Uses of Interface
org.biopax.paxtools.model.level2.interaction

Packages that use interaction

Package	Description
org.biopax.paxtools.model.level2	This package contains the interfaces that maps to the BioPAX level 2 specification.

Uses of interaction in org.biopax.paxtools.model.level2

Subinterfaces of interaction in org.biopax.paxtools.model.level2

Modifier and Type	Interface	Description
interface	biochemicalReaction	A conversion interaction in which one or more entities (substrates) undergo ovalent changes to become one or more other entities (products).
interface	catalysis	A control interaction in which a physical entity (a catalyst) increases the rate of a conversion interaction by lowering its activation energy.
interface	complexAssembly	A conversion interaction in which a set of physical entities, at least one being a macromolecule (e.g.
interface	control
interface	conversion
interface	modulation	get controlled should be catalysis
interface	physicalInteraction
interface	transport
interface	transportWithBiochemicalReaction

Methods in org.biopax.paxtools.model.level2 with type parameters of type interaction

Modifier and Type	Method	Description
<T extends interaction> Set<T>	physicalEntity.getAllInteractions(Class<T> ofType)

Methods in org.biopax.paxtools.model.level2 that return types with arguments of type interaction

Modifier and Type	Method	Description
Set<interaction>	physicalEntity.getAllInteractions()
Set<interaction>	InteractionParticipant.isPARTICIPANTSof()	This method returns the interaction that this entity/pep takes part in.