Package org.biopax.paxtools.model.level2
package org.biopax.paxtools.model.level2
This package contains the interfaces that maps to the BioPAX level 2 specification.
Note that although BioPAX level 2 is not camel case we have opted to use the capitalization style directly to
avoid any confusions.
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ClassDescriptionA conversion interaction in which one or more entities (substrates) undergo ovalent changes to become one or more other entities (products).The biological source of an entity (e.g.A control interaction in which a physical entity (a catalyst) increases the rate of a conversion interaction by lowering its activation energy.Describes a small molecule structure.A physical entity whose structure is comprised of other physical entities bound to each other non-covalently, at least one of which is a macromolecule (e.g.A conversion interaction in which a set of physical entities, at least one being a macromolecule (e.g.Confidence that the containing instance actually occurs or exists in vivo, usually a statistical measure.User: root Date: Aug 1, 2006 Time: 5:37:34 PM_DOTXREF Should be only unification and publication xrefsCatalysis direction controlled vocabularyThis class represents a discrete biological unit used when describing pathways.marker interface for entities and PEPsCreated by IntelliJ IDEA.get controlled should be catalysisInterface for pathway steps and processesThis represents a set of pathway events.Tagging interface for entities that needs evidence and can be targeted by a control : Pathway and InteractionUser: root Date: Aug 7, 2006 Time: 4:51:19 PM_DOT