Uses of Package
org.biopax.paxtools.model.level2
Packages that use org.biopax.paxtools.model.level2
Package
Description
This package contains various methods and algorithms for traversing and manipulating the model.
This package contains the interfaces that maps to the BioPAX level 2 specification.
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Classes in org.biopax.paxtools.model.level2 used by org.biopax.paxtools.controller
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Classes in org.biopax.paxtools.model.level2 used by org.biopax.paxtools.model.level2ClassDescriptionA conversion interaction in which one or more entities (substrates) undergo ovalent changes to become one or more other entities (products).The biological source of an entity (e.g.Describes a small molecule structure.A physical entity whose structure is comprised of other physical entities bound to each other non-covalently, at least one of which is a macromolecule (e.g.Confidence that the containing instance actually occurs or exists in vivo, usually a statistical measure.User: root Date: Aug 1, 2006 Time: 5:37:34 PM_DOTXREF Should be only unification and publication xrefsCatalysis direction controlled vocabularyThis class represents a discrete biological unit used when describing pathways.marker interface for entities and PEPsCreated by IntelliJ IDEA.Interface for pathway steps and processesThis represents a set of pathway events.Tagging interface for entities that needs evidence and can be targeted by a control : Pathway and InteractionUser: root Date: Aug 7, 2006 Time: 4:51:19 PM_DOT