physicalEntity (Paxtools Core (BioPAX object model, I/O API, implementation and extras) 5.2.2 API)

All Superinterfaces:: BioPAXElement, Cloneable, entity, InteractionParticipant, Level2Element, Serializable, XReferrable

All Known Subinterfaces:: complex, dna, protein, rna, sequenceEntity, smallMolecule

public interface physicalEntity extends entity

Field Summary

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement
UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT
Method Summary

Modifier and Type

Method

Description

void

addPHYSICAL_ENTITYof(physicalEntityParticipant pep)

Set<interaction>

getAllInteractions()

<T extends interaction> Set<T>

getAllInteractions(Class<T> ofType)

Set<physicalEntityParticipant>

isPHYSICAL_ENTITYof()

void

removePHYSICAL_ENTITYof(physicalEntityParticipant pep)

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement
equivalenceCode, getAnnotations, getModelInterface, getUri, isEquivalent

Methods inherited from interface org.biopax.paxtools.model.level2.entity
addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant
isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.Level2Element
addCOMMENT, getCOMMENT, removeCOMMENT, setCOMMENT

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable
addXREF, findCommonPublications, findCommonRelationships, findCommonUnifications, getXREF, removeXREF, setXREF

Method Details
- isPHYSICAL_ENTITYof
  
  Set<physicalEntityParticipant> isPHYSICAL_ENTITYof()
- getAllInteractions
  
  Set<interaction> getAllInteractions()
- getAllInteractions
  
  <T extends interaction> Set<T> getAllInteractions(Class<T> ofType)
- addPHYSICAL_ENTITYof
  
  void addPHYSICAL_ENTITYof(physicalEntityParticipant pep)
- removePHYSICAL_ENTITYof
  
  void removePHYSICAL_ENTITYof(physicalEntityParticipant pep)