Package org.biopax.paxtools.model.level2

Interface physicalInteraction

All Superinterfaces:

BioPAXElement, Cloneable, entity, interaction, InteractionParticipant, Level2Element, pathwayComponent, process, Serializable, XReferrable

All Known Subinterfaces:

biochemicalReaction, catalysis, complexAssembly, control, conversion, modulation, transport, transportWithBiochemicalReaction

public interface physicalInteraction
extends interaction

Field Summary

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Method Summary

Modifier and Type	Method	Description
void	addINTERACTION_TYPE(openControlledVocabulary INTERACTION_TYPE)
Set<openControlledVocabulary>	getINTERACTION_TYPE()
void	removeINTERACTION_TYPE(openControlledVocabulary INTERACTION_TYPE)
void	setINTERACTION_TYPE(Set<openControlledVocabulary> INTERACTION_TYPE)

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getModelInterface, getUri, isEquivalent

Methods inherited from interface org.biopax.paxtools.model.level2.entity

addAVAILABILITY, addDATA_SOURCE, addSYNONYMS, getAVAILABILITY, getDATA_SOURCE, getNAME, getSHORT_NAME, getSYNONYMS, removeAVAILABILITY, removeDATA_SOURCE, removeSYNONYMS, setAVAILABILITY, setDATA_SOURCE, setNAME, setSHORT_NAME, setSYNONYMS

Methods inherited from interface org.biopax.paxtools.model.level2.interaction

addPARTICIPANTS, getPARTICIPANTS, removePARTICIPANTS, setPARTICIPANTS

Methods inherited from interface org.biopax.paxtools.model.level2.InteractionParticipant

isPARTICIPANTSof

Methods inherited from interface org.biopax.paxtools.model.level2.Level2Element

addCOMMENT, getCOMMENT, removeCOMMENT, setCOMMENT

Methods inherited from interface org.biopax.paxtools.model.level2.process

addEVIDENCE, getEVIDENCE, isCONTROLLEDOf, isPATHWAY_COMPONENTSof, isSTEP_INTERACTIONSOf, removeEVIDENCE, setEVIDENCE

Methods inherited from interface org.biopax.paxtools.model.level2.XReferrable

addXREF, findCommonPublications, findCommonRelationships, findCommonUnifications, getXREF, removeXREF, setXREF

Method Details

addINTERACTION_TYPE

void addINTERACTION_TYPE(openControlledVocabulary INTERACTION_TYPE)

getINTERACTION_TYPE

Set<openControlledVocabulary> getINTERACTION_TYPE()

removeINTERACTION_TYPE

void removeINTERACTION_TYPE(openControlledVocabulary INTERACTION_TYPE)

setINTERACTION_TYPE

void setINTERACTION_TYPE(Set<openControlledVocabulary> INTERACTION_TYPE)