Package org.biopax.paxtools.model.level3

Interface SequenceEntity

All Superinterfaces:

BioPAXElement, Cloneable, Controller, Entity, Level3Element, Named, Observable, PhysicalEntity, Serializable, SimplePhysicalEntity, XReferrable

All Known Subinterfaces:

Dna, DnaRegion, NucleicAcid, Protein, Rna, RnaRegion

All Known Implementing Classes:

DnaImpl, DnaRegionImpl, NucleicAcidImpl, ProteinImpl, RnaImpl, RnaRegionImpl

public interface SequenceEntity
extends SimplePhysicalEntity

Tagger interface for macromolecules that are related to a genetic sequence: DNA, RNA, Protein.

Field Summary

Fields inherited from interface org.biopax.paxtools.model.BioPAXElement

UNKNOWN_DOUBLE, UNKNOWN_FLOAT, UNKNOWN_INT

Method Summary

Methods inherited from interface org.biopax.paxtools.model.BioPAXElement

equivalenceCode, getAnnotations, getUri, isEquivalent

Methods inherited from interface org.biopax.paxtools.model.level3.Controller

getControllerOf

Methods inherited from interface org.biopax.paxtools.model.level3.Entity

addAvailability, addDataSource, getAvailability, getDataSource, getParticipantOf, removeAvailability, removeDataSource

Methods inherited from interface org.biopax.paxtools.model.level3.Level3Element

addComment, getComment, removeComment

Methods inherited from interface org.biopax.paxtools.model.level3.Named

addName, getDisplayName, getName, getStandardName, removeName, setDisplayName, setName, setStandardName

Methods inherited from interface org.biopax.paxtools.model.level3.Observable

addEvidence, getEvidence, removeEvidence

Methods inherited from interface org.biopax.paxtools.model.level3.PhysicalEntity

addFeature, addMemberPhysicalEntity, addNotFeature, getCellularLocation, getComponentOf, getFeature, getMemberPhysicalEntity, getMemberPhysicalEntityOf, getModelInterface, getNotFeature, hasEquivalentCellularLocation, hasEquivalentFeatures, removeFeature, removeMemberPhysicalEntity, removeNotFeature, setCellularLocation

Methods inherited from interface org.biopax.paxtools.model.level3.SimplePhysicalEntity

getEntityReference, getGenericEntityReferences, setEntityReference

Methods inherited from interface org.biopax.paxtools.model.level3.XReferrable

addXref, getXref, removeXref