Uses of Interface
org.biopax.paxtools.model.level3.Controller

Packages that use Controller

Package	Description
org.biopax.paxtools.impl.level3	This package contains the default implementation for BioPAX Level 3.
org.biopax.paxtools.model.level3	This package contains the interfaces that maps classes defined in the BioPAX Level 3 specification.

Uses of Controller in org.biopax.paxtools.impl.level3

Classes in org.biopax.paxtools.impl.level3 that implement Controller

Modifier and Type	Class	Description
class	ComplexImpl
class	DnaImpl
class	DnaRegionImpl
class	NucleicAcidImpl
class	PathwayImpl
class	PhysicalEntityImpl
class	ProteinImpl
class	RnaImpl
class	RnaRegionImpl
class	SimplePhysicalEntityImpl
class	SmallMoleculeImpl

Methods in org.biopax.paxtools.impl.level3 that return types with arguments of type Controller

Modifier and Type	Method	Description
Set<Controller>	ControlImpl.getController()

Methods in org.biopax.paxtools.impl.level3 with parameters of type Controller

Modifier and Type	Method	Description
void	CatalysisImpl.addController(Controller controller)
void	ControlImpl.addController(Controller controller)
void	ControlImpl.removeController(Controller controller)

Uses of Controller in org.biopax.paxtools.model.level3

Subinterfaces of Controller in org.biopax.paxtools.model.level3

Modifier and Type	Interface	Description
interface	Complex	Definition: A physical entity whose structure is comprised of other physical entities bound to each other non-covalently, at least one of which is a macromolecule (e.g.
interface	Dna	Definition: A physical entity consisting of a sequence of deoxyribonucleotide monophosphates; a deoxyribonucleic acid.
interface	DnaRegion	Definition: A region on a DNA molecule.
interface	NucleicAcid	Tagger interface for DNA and RNA
interface	Pathway
interface	PhysicalEntity
interface	Protein
interface	Rna
interface	RnaRegion	Definition: A region on a RNA molecule.
interface	SequenceEntity	Tagger interface for macromolecules that are related to a genetic sequence: DNA, RNA, Protein.
interface	SimplePhysicalEntity	Tagger interface for non-complex physical entities
interface	SmallMolecule

Methods in org.biopax.paxtools.model.level3 that return types with arguments of type Controller

Modifier and Type	Method	Description
Set<Controller>	Control.getController()	The controlling entity, e.g., in a biochemical reaction, an enzyme is the controlling entity of the reaction.

Methods in org.biopax.paxtools.model.level3 with parameters of type Controller

Modifier and Type	Method	Description
void	Control.addController(Controller controller)	The controlling entity, e.g., in a biochemical reaction, an enzyme is the controlling entity of the reaction.
void	Control.removeController(Controller controller)	The controlling entity, e.g., in a biochemical reaction, an enzyme is the controlling entity of the reaction.