org.biopax.paxtools.model.level3 Class Hierarchy (Paxtools Core (BioPAX object model, I/O API, implementation and extras) 5.2.2 API)

Package Hierarchies:

All Packages

Interface Hierarchy

java.lang.Cloneable
- org.biopax.paxtools.model.BioPAXElement (also extends java.io.Serializable)
  - org.biopax.paxtools.model.level3.Level3Element
    - org.biopax.paxtools.model.level3.Entity (also extends org.biopax.paxtools.model.level3.Named, org.biopax.paxtools.model.level3.Observable)
      - org.biopax.paxtools.model.level3.Controller
        
        org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Process)
        
        org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Entity)
        
        org.biopax.paxtools.model.level3.Complex
        
        org.biopax.paxtools.model.level3.SimplePhysicalEntity
        
        org.biopax.paxtools.model.level3.SequenceEntity
        
        org.biopax.paxtools.model.level3.NucleicAcid
        
        org.biopax.paxtools.model.level3.Dna
        
        org.biopax.paxtools.model.level3.DnaRegion
        
        org.biopax.paxtools.model.level3.Rna
        
        org.biopax.paxtools.model.level3.RnaRegion
        
        org.biopax.paxtools.model.level3.Protein
        
        org.biopax.paxtools.model.level3.SmallMolecule
      - org.biopax.paxtools.model.level3.Gene
      - org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Controller)
        
        org.biopax.paxtools.model.level3.Complex
        
        org.biopax.paxtools.model.level3.SimplePhysicalEntity
        
        org.biopax.paxtools.model.level3.SequenceEntity
        
        org.biopax.paxtools.model.level3.NucleicAcid
        
        org.biopax.paxtools.model.level3.Dna
        
        org.biopax.paxtools.model.level3.DnaRegion
        
        org.biopax.paxtools.model.level3.Rna
        
        org.biopax.paxtools.model.level3.RnaRegion
        
        org.biopax.paxtools.model.level3.Protein
        
        org.biopax.paxtools.model.level3.SmallMolecule
      - org.biopax.paxtools.model.level3.Process
        
        org.biopax.paxtools.model.level3.Interaction
        
        org.biopax.paxtools.model.level3.Control
        
        org.biopax.paxtools.model.level3.Catalysis
        
        org.biopax.paxtools.model.level3.Modulation
        
        org.biopax.paxtools.model.level3.TemplateReactionRegulation
        
        org.biopax.paxtools.model.level3.Conversion
        
        org.biopax.paxtools.model.level3.BiochemicalReaction
        
        org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.Transport)
        
        org.biopax.paxtools.model.level3.ComplexAssembly
        
        org.biopax.paxtools.model.level3.Degradation
        
        org.biopax.paxtools.model.level3.Transport
        
        org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.BiochemicalReaction)
        
        org.biopax.paxtools.model.level3.GeneticInteraction
        
        org.biopax.paxtools.model.level3.MolecularInteraction
        
        org.biopax.paxtools.model.level3.TemplateReaction
        
        org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Controller)
    - org.biopax.paxtools.model.level3.Observable
      - org.biopax.paxtools.model.level3.Entity (also extends org.biopax.paxtools.model.level3.Level3Element, org.biopax.paxtools.model.level3.Named)
        
        org.biopax.paxtools.model.level3.Controller
        
        org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Process)
        
        org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Entity)
        
        org.biopax.paxtools.model.level3.Complex
        
        org.biopax.paxtools.model.level3.SimplePhysicalEntity
        
        org.biopax.paxtools.model.level3.SequenceEntity
        
        org.biopax.paxtools.model.level3.NucleicAcid
        
        org.biopax.paxtools.model.level3.Dna
        
        org.biopax.paxtools.model.level3.DnaRegion
        
        org.biopax.paxtools.model.level3.Rna
        
        org.biopax.paxtools.model.level3.RnaRegion
        
        org.biopax.paxtools.model.level3.Protein
        
        org.biopax.paxtools.model.level3.SmallMolecule
        
        org.biopax.paxtools.model.level3.Gene
        
        org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Controller)
        
        org.biopax.paxtools.model.level3.Complex
        
        org.biopax.paxtools.model.level3.SimplePhysicalEntity
        
        org.biopax.paxtools.model.level3.SequenceEntity
        
        org.biopax.paxtools.model.level3.NucleicAcid
        
        org.biopax.paxtools.model.level3.Dna
        
        org.biopax.paxtools.model.level3.DnaRegion
        
        org.biopax.paxtools.model.level3.Rna
        
        org.biopax.paxtools.model.level3.RnaRegion
        
        org.biopax.paxtools.model.level3.Protein
        
        org.biopax.paxtools.model.level3.SmallMolecule
        
        org.biopax.paxtools.model.level3.Process
        
        org.biopax.paxtools.model.level3.Interaction
        
        org.biopax.paxtools.model.level3.Control
        
        org.biopax.paxtools.model.level3.Catalysis
        
        org.biopax.paxtools.model.level3.Modulation
        
        org.biopax.paxtools.model.level3.TemplateReactionRegulation
        
        org.biopax.paxtools.model.level3.Conversion
        
        org.biopax.paxtools.model.level3.BiochemicalReaction
        
        org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.Transport)
        
        org.biopax.paxtools.model.level3.ComplexAssembly
        
        org.biopax.paxtools.model.level3.Degradation
        
        org.biopax.paxtools.model.level3.Transport
        
        org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.BiochemicalReaction)
        
        org.biopax.paxtools.model.level3.GeneticInteraction
        
        org.biopax.paxtools.model.level3.MolecularInteraction
        
        org.biopax.paxtools.model.level3.TemplateReaction
        
        org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Controller)
      - org.biopax.paxtools.model.level3.EntityFeature (also extends org.biopax.paxtools.model.level3.UtilityClass)
        
        org.biopax.paxtools.model.level3.BindingFeature
        
        org.biopax.paxtools.model.level3.CovalentBindingFeature (also extends org.biopax.paxtools.model.level3.ModificationFeature)
        
        org.biopax.paxtools.model.level3.FragmentFeature
        
        org.biopax.paxtools.model.level3.ModificationFeature
        
        org.biopax.paxtools.model.level3.CovalentBindingFeature (also extends org.biopax.paxtools.model.level3.BindingFeature)
      - org.biopax.paxtools.model.level3.EntityReference (also extends org.biopax.paxtools.model.level3.Named, org.biopax.paxtools.model.level3.UtilityClass)
        
        org.biopax.paxtools.model.level3.SequenceEntityReference
        
        org.biopax.paxtools.model.level3.NucleicAcidReference
        
        org.biopax.paxtools.model.level3.DnaReference
        
        org.biopax.paxtools.model.level3.NucleicAcidRegionReference
        
        org.biopax.paxtools.model.level3.DnaRegionReference
        
        org.biopax.paxtools.model.level3.RnaRegionReference
        
        org.biopax.paxtools.model.level3.RnaReference
        
        org.biopax.paxtools.model.level3.ProteinReference
        
        org.biopax.paxtools.model.level3.SmallMoleculeReference
      - org.biopax.paxtools.model.level3.PathwayStep (also extends org.biopax.paxtools.model.level3.UtilityClass)
        
        org.biopax.paxtools.model.level3.BiochemicalPathwayStep
    - org.biopax.paxtools.model.level3.UtilityClass
      - org.biopax.paxtools.model.level3.BioSource (also extends org.biopax.paxtools.model.level3.Named)
      - org.biopax.paxtools.model.level3.ChemicalConstant
        
        org.biopax.paxtools.model.level3.DeltaG
        
        org.biopax.paxtools.model.level3.KPrime
      - org.biopax.paxtools.model.level3.ChemicalStructure
      - org.biopax.paxtools.model.level3.ControlledVocabulary (also extends org.biopax.paxtools.model.level3.XReferrable)
        
        org.biopax.paxtools.model.level3.CellularLocationVocabulary
        
        org.biopax.paxtools.model.level3.CellVocabulary
        
        org.biopax.paxtools.model.level3.EntityReferenceTypeVocabulary
        
        org.biopax.paxtools.model.level3.EvidenceCodeVocabulary
        
        org.biopax.paxtools.model.level3.ExperimentalFormVocabulary
        
        org.biopax.paxtools.model.level3.InteractionVocabulary
        
        org.biopax.paxtools.model.level3.PhenotypeVocabulary
        
        org.biopax.paxtools.model.level3.RelationshipTypeVocabulary
        
        org.biopax.paxtools.model.level3.SequenceModificationVocabulary
        
        org.biopax.paxtools.model.level3.SequenceRegionVocabulary
        
        org.biopax.paxtools.model.level3.TissueVocabulary
      - org.biopax.paxtools.model.level3.EntityFeature (also extends org.biopax.paxtools.model.level3.Observable)
        
        org.biopax.paxtools.model.level3.BindingFeature
        
        org.biopax.paxtools.model.level3.CovalentBindingFeature (also extends org.biopax.paxtools.model.level3.ModificationFeature)
        
        org.biopax.paxtools.model.level3.FragmentFeature
        
        org.biopax.paxtools.model.level3.ModificationFeature
        
        org.biopax.paxtools.model.level3.CovalentBindingFeature (also extends org.biopax.paxtools.model.level3.BindingFeature)
      - org.biopax.paxtools.model.level3.EntityReference (also extends org.biopax.paxtools.model.level3.Named, org.biopax.paxtools.model.level3.Observable)
        
        org.biopax.paxtools.model.level3.SequenceEntityReference
        
        org.biopax.paxtools.model.level3.NucleicAcidReference
        
        org.biopax.paxtools.model.level3.DnaReference
        
        org.biopax.paxtools.model.level3.NucleicAcidRegionReference
        
        org.biopax.paxtools.model.level3.DnaRegionReference
        
        org.biopax.paxtools.model.level3.RnaRegionReference
        
        org.biopax.paxtools.model.level3.RnaReference
        
        org.biopax.paxtools.model.level3.ProteinReference
        
        org.biopax.paxtools.model.level3.SmallMoleculeReference
      - org.biopax.paxtools.model.level3.Evidence (also extends org.biopax.paxtools.model.level3.XReferrable)
      - org.biopax.paxtools.model.level3.ExperimentalForm
      - org.biopax.paxtools.model.level3.PathwayStep (also extends org.biopax.paxtools.model.level3.Observable)
        
        org.biopax.paxtools.model.level3.BiochemicalPathwayStep
      - org.biopax.paxtools.model.level3.Provenance (also extends org.biopax.paxtools.model.level3.Named, org.biopax.paxtools.model.level3.XReferrable)
      - org.biopax.paxtools.model.level3.Score (also extends org.biopax.paxtools.model.level3.XReferrable)
      - org.biopax.paxtools.model.level3.SequenceLocation
        
        org.biopax.paxtools.model.level3.SequenceInterval
        
        org.biopax.paxtools.model.level3.SequenceSite
      - org.biopax.paxtools.model.level3.Stoichiometry
      - org.biopax.paxtools.model.level3.Xref
        
        org.biopax.paxtools.model.level3.PublicationXref
        
        org.biopax.paxtools.model.level3.RelationshipXref
        
        org.biopax.paxtools.model.level3.UnificationXref
    - org.biopax.paxtools.model.level3.XReferrable
      - org.biopax.paxtools.model.level3.ControlledVocabulary (also extends org.biopax.paxtools.model.level3.UtilityClass)
        
        org.biopax.paxtools.model.level3.CellularLocationVocabulary
        
        org.biopax.paxtools.model.level3.CellVocabulary
        
        org.biopax.paxtools.model.level3.EntityReferenceTypeVocabulary
        
        org.biopax.paxtools.model.level3.EvidenceCodeVocabulary
        
        org.biopax.paxtools.model.level3.ExperimentalFormVocabulary
        
        org.biopax.paxtools.model.level3.InteractionVocabulary
        
        org.biopax.paxtools.model.level3.PhenotypeVocabulary
        
        org.biopax.paxtools.model.level3.RelationshipTypeVocabulary
        
        org.biopax.paxtools.model.level3.SequenceModificationVocabulary
        
        org.biopax.paxtools.model.level3.SequenceRegionVocabulary
        
        org.biopax.paxtools.model.level3.TissueVocabulary
      - org.biopax.paxtools.model.level3.Evidence (also extends org.biopax.paxtools.model.level3.UtilityClass)
      - org.biopax.paxtools.model.level3.Named
        
        org.biopax.paxtools.model.level3.BioSource (also extends org.biopax.paxtools.model.level3.UtilityClass)
        
        org.biopax.paxtools.model.level3.Entity (also extends org.biopax.paxtools.model.level3.Level3Element, org.biopax.paxtools.model.level3.Observable)
        
        org.biopax.paxtools.model.level3.Controller
        
        org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Process)
        
        org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Entity)
        
        org.biopax.paxtools.model.level3.Complex
        
        org.biopax.paxtools.model.level3.SimplePhysicalEntity
        
        org.biopax.paxtools.model.level3.SequenceEntity
        
        org.biopax.paxtools.model.level3.NucleicAcid
        
        org.biopax.paxtools.model.level3.Dna
        
        org.biopax.paxtools.model.level3.DnaRegion
        
        org.biopax.paxtools.model.level3.Rna
        
        org.biopax.paxtools.model.level3.RnaRegion
        
        org.biopax.paxtools.model.level3.Protein
        
        org.biopax.paxtools.model.level3.SmallMolecule
        
        org.biopax.paxtools.model.level3.Gene
        
        org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Controller)
        
        org.biopax.paxtools.model.level3.Complex
        
        org.biopax.paxtools.model.level3.SimplePhysicalEntity
        
        org.biopax.paxtools.model.level3.SequenceEntity
        
        org.biopax.paxtools.model.level3.NucleicAcid
        
        org.biopax.paxtools.model.level3.Dna
        
        org.biopax.paxtools.model.level3.DnaRegion
        
        org.biopax.paxtools.model.level3.Rna
        
        org.biopax.paxtools.model.level3.RnaRegion
        
        org.biopax.paxtools.model.level3.Protein
        
        org.biopax.paxtools.model.level3.SmallMolecule
        
        org.biopax.paxtools.model.level3.Process
        
        org.biopax.paxtools.model.level3.Interaction
        
        org.biopax.paxtools.model.level3.Control
        
        org.biopax.paxtools.model.level3.Catalysis
        
        org.biopax.paxtools.model.level3.Modulation
        
        org.biopax.paxtools.model.level3.TemplateReactionRegulation
        
        org.biopax.paxtools.model.level3.Conversion
        
        org.biopax.paxtools.model.level3.BiochemicalReaction
        
        org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.Transport)
        
        org.biopax.paxtools.model.level3.ComplexAssembly
        
        org.biopax.paxtools.model.level3.Degradation
        
        org.biopax.paxtools.model.level3.Transport
        
        org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.BiochemicalReaction)
        
        org.biopax.paxtools.model.level3.GeneticInteraction
        
        org.biopax.paxtools.model.level3.MolecularInteraction
        
        org.biopax.paxtools.model.level3.TemplateReaction
        
        org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Controller)
        
        org.biopax.paxtools.model.level3.EntityReference (also extends org.biopax.paxtools.model.level3.Observable, org.biopax.paxtools.model.level3.UtilityClass)
        
        org.biopax.paxtools.model.level3.SequenceEntityReference
        
        org.biopax.paxtools.model.level3.NucleicAcidReference
        
        org.biopax.paxtools.model.level3.DnaReference
        
        org.biopax.paxtools.model.level3.NucleicAcidRegionReference
        
        org.biopax.paxtools.model.level3.DnaRegionReference
        
        org.biopax.paxtools.model.level3.RnaRegionReference
        
        org.biopax.paxtools.model.level3.RnaReference
        
        org.biopax.paxtools.model.level3.ProteinReference
        
        org.biopax.paxtools.model.level3.SmallMoleculeReference
        
        org.biopax.paxtools.model.level3.Provenance (also extends org.biopax.paxtools.model.level3.UtilityClass, org.biopax.paxtools.model.level3.XReferrable)
      - org.biopax.paxtools.model.level3.Provenance (also extends org.biopax.paxtools.model.level3.Named, org.biopax.paxtools.model.level3.UtilityClass)
      - org.biopax.paxtools.model.level3.Score (also extends org.biopax.paxtools.model.level3.UtilityClass)
java.io.Serializable
- org.biopax.paxtools.model.BioPAXElement (also extends java.lang.Cloneable)
  - org.biopax.paxtools.model.level3.Level3Element
    - org.biopax.paxtools.model.level3.Entity (also extends org.biopax.paxtools.model.level3.Named, org.biopax.paxtools.model.level3.Observable)
      - org.biopax.paxtools.model.level3.Controller
        
        org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Process)
        
        org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Entity)
        
        org.biopax.paxtools.model.level3.Complex
        
        org.biopax.paxtools.model.level3.SimplePhysicalEntity
        
        org.biopax.paxtools.model.level3.SequenceEntity
        
        org.biopax.paxtools.model.level3.NucleicAcid
        
        org.biopax.paxtools.model.level3.Dna
        
        org.biopax.paxtools.model.level3.DnaRegion
        
        org.biopax.paxtools.model.level3.Rna
        
        org.biopax.paxtools.model.level3.RnaRegion
        
        org.biopax.paxtools.model.level3.Protein
        
        org.biopax.paxtools.model.level3.SmallMolecule
      - org.biopax.paxtools.model.level3.Gene
      - org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Controller)
        
        org.biopax.paxtools.model.level3.Complex
        
        org.biopax.paxtools.model.level3.SimplePhysicalEntity
        
        org.biopax.paxtools.model.level3.SequenceEntity
        
        org.biopax.paxtools.model.level3.NucleicAcid
        
        org.biopax.paxtools.model.level3.Dna
        
        org.biopax.paxtools.model.level3.DnaRegion
        
        org.biopax.paxtools.model.level3.Rna
        
        org.biopax.paxtools.model.level3.RnaRegion
        
        org.biopax.paxtools.model.level3.Protein
        
        org.biopax.paxtools.model.level3.SmallMolecule
      - org.biopax.paxtools.model.level3.Process
        
        org.biopax.paxtools.model.level3.Interaction
        
        org.biopax.paxtools.model.level3.Control
        
        org.biopax.paxtools.model.level3.Catalysis
        
        org.biopax.paxtools.model.level3.Modulation
        
        org.biopax.paxtools.model.level3.TemplateReactionRegulation
        
        org.biopax.paxtools.model.level3.Conversion
        
        org.biopax.paxtools.model.level3.BiochemicalReaction
        
        org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.Transport)
        
        org.biopax.paxtools.model.level3.ComplexAssembly
        
        org.biopax.paxtools.model.level3.Degradation
        
        org.biopax.paxtools.model.level3.Transport
        
        org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.BiochemicalReaction)
        
        org.biopax.paxtools.model.level3.GeneticInteraction
        
        org.biopax.paxtools.model.level3.MolecularInteraction
        
        org.biopax.paxtools.model.level3.TemplateReaction
        
        org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Controller)
    - org.biopax.paxtools.model.level3.Observable
      - org.biopax.paxtools.model.level3.Entity (also extends org.biopax.paxtools.model.level3.Level3Element, org.biopax.paxtools.model.level3.Named)
        
        org.biopax.paxtools.model.level3.Controller
        
        org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Process)
        
        org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Entity)
        
        org.biopax.paxtools.model.level3.Complex
        
        org.biopax.paxtools.model.level3.SimplePhysicalEntity
        
        org.biopax.paxtools.model.level3.SequenceEntity
        
        org.biopax.paxtools.model.level3.NucleicAcid
        
        org.biopax.paxtools.model.level3.Dna
        
        org.biopax.paxtools.model.level3.DnaRegion
        
        org.biopax.paxtools.model.level3.Rna
        
        org.biopax.paxtools.model.level3.RnaRegion
        
        org.biopax.paxtools.model.level3.Protein
        
        org.biopax.paxtools.model.level3.SmallMolecule
        
        org.biopax.paxtools.model.level3.Gene
        
        org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Controller)
        
        org.biopax.paxtools.model.level3.Complex
        
        org.biopax.paxtools.model.level3.SimplePhysicalEntity
        
        org.biopax.paxtools.model.level3.SequenceEntity
        
        org.biopax.paxtools.model.level3.NucleicAcid
        
        org.biopax.paxtools.model.level3.Dna
        
        org.biopax.paxtools.model.level3.DnaRegion
        
        org.biopax.paxtools.model.level3.Rna
        
        org.biopax.paxtools.model.level3.RnaRegion
        
        org.biopax.paxtools.model.level3.Protein
        
        org.biopax.paxtools.model.level3.SmallMolecule
        
        org.biopax.paxtools.model.level3.Process
        
        org.biopax.paxtools.model.level3.Interaction
        
        org.biopax.paxtools.model.level3.Control
        
        org.biopax.paxtools.model.level3.Catalysis
        
        org.biopax.paxtools.model.level3.Modulation
        
        org.biopax.paxtools.model.level3.TemplateReactionRegulation
        
        org.biopax.paxtools.model.level3.Conversion
        
        org.biopax.paxtools.model.level3.BiochemicalReaction
        
        org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.Transport)
        
        org.biopax.paxtools.model.level3.ComplexAssembly
        
        org.biopax.paxtools.model.level3.Degradation
        
        org.biopax.paxtools.model.level3.Transport
        
        org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.BiochemicalReaction)
        
        org.biopax.paxtools.model.level3.GeneticInteraction
        
        org.biopax.paxtools.model.level3.MolecularInteraction
        
        org.biopax.paxtools.model.level3.TemplateReaction
        
        org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Controller)
      - org.biopax.paxtools.model.level3.EntityFeature (also extends org.biopax.paxtools.model.level3.UtilityClass)
        
        org.biopax.paxtools.model.level3.BindingFeature
        
        org.biopax.paxtools.model.level3.CovalentBindingFeature (also extends org.biopax.paxtools.model.level3.ModificationFeature)
        
        org.biopax.paxtools.model.level3.FragmentFeature
        
        org.biopax.paxtools.model.level3.ModificationFeature
        
        org.biopax.paxtools.model.level3.CovalentBindingFeature (also extends org.biopax.paxtools.model.level3.BindingFeature)
      - org.biopax.paxtools.model.level3.EntityReference (also extends org.biopax.paxtools.model.level3.Named, org.biopax.paxtools.model.level3.UtilityClass)
        
        org.biopax.paxtools.model.level3.SequenceEntityReference
        
        org.biopax.paxtools.model.level3.NucleicAcidReference
        
        org.biopax.paxtools.model.level3.DnaReference
        
        org.biopax.paxtools.model.level3.NucleicAcidRegionReference
        
        org.biopax.paxtools.model.level3.DnaRegionReference
        
        org.biopax.paxtools.model.level3.RnaRegionReference
        
        org.biopax.paxtools.model.level3.RnaReference
        
        org.biopax.paxtools.model.level3.ProteinReference
        
        org.biopax.paxtools.model.level3.SmallMoleculeReference
      - org.biopax.paxtools.model.level3.PathwayStep (also extends org.biopax.paxtools.model.level3.UtilityClass)
        
        org.biopax.paxtools.model.level3.BiochemicalPathwayStep
    - org.biopax.paxtools.model.level3.UtilityClass
      - org.biopax.paxtools.model.level3.BioSource (also extends org.biopax.paxtools.model.level3.Named)
      - org.biopax.paxtools.model.level3.ChemicalConstant
        
        org.biopax.paxtools.model.level3.DeltaG
        
        org.biopax.paxtools.model.level3.KPrime
      - org.biopax.paxtools.model.level3.ChemicalStructure
      - org.biopax.paxtools.model.level3.ControlledVocabulary (also extends org.biopax.paxtools.model.level3.XReferrable)
        
        org.biopax.paxtools.model.level3.CellularLocationVocabulary
        
        org.biopax.paxtools.model.level3.CellVocabulary
        
        org.biopax.paxtools.model.level3.EntityReferenceTypeVocabulary
        
        org.biopax.paxtools.model.level3.EvidenceCodeVocabulary
        
        org.biopax.paxtools.model.level3.ExperimentalFormVocabulary
        
        org.biopax.paxtools.model.level3.InteractionVocabulary
        
        org.biopax.paxtools.model.level3.PhenotypeVocabulary
        
        org.biopax.paxtools.model.level3.RelationshipTypeVocabulary
        
        org.biopax.paxtools.model.level3.SequenceModificationVocabulary
        
        org.biopax.paxtools.model.level3.SequenceRegionVocabulary
        
        org.biopax.paxtools.model.level3.TissueVocabulary
      - org.biopax.paxtools.model.level3.EntityFeature (also extends org.biopax.paxtools.model.level3.Observable)
        
        org.biopax.paxtools.model.level3.BindingFeature
        
        org.biopax.paxtools.model.level3.CovalentBindingFeature (also extends org.biopax.paxtools.model.level3.ModificationFeature)
        
        org.biopax.paxtools.model.level3.FragmentFeature
        
        org.biopax.paxtools.model.level3.ModificationFeature
        
        org.biopax.paxtools.model.level3.CovalentBindingFeature (also extends org.biopax.paxtools.model.level3.BindingFeature)
      - org.biopax.paxtools.model.level3.EntityReference (also extends org.biopax.paxtools.model.level3.Named, org.biopax.paxtools.model.level3.Observable)
        
        org.biopax.paxtools.model.level3.SequenceEntityReference
        
        org.biopax.paxtools.model.level3.NucleicAcidReference
        
        org.biopax.paxtools.model.level3.DnaReference
        
        org.biopax.paxtools.model.level3.NucleicAcidRegionReference
        
        org.biopax.paxtools.model.level3.DnaRegionReference
        
        org.biopax.paxtools.model.level3.RnaRegionReference
        
        org.biopax.paxtools.model.level3.RnaReference
        
        org.biopax.paxtools.model.level3.ProteinReference
        
        org.biopax.paxtools.model.level3.SmallMoleculeReference
      - org.biopax.paxtools.model.level3.Evidence (also extends org.biopax.paxtools.model.level3.XReferrable)
      - org.biopax.paxtools.model.level3.ExperimentalForm
      - org.biopax.paxtools.model.level3.PathwayStep (also extends org.biopax.paxtools.model.level3.Observable)
        
        org.biopax.paxtools.model.level3.BiochemicalPathwayStep
      - org.biopax.paxtools.model.level3.Provenance (also extends org.biopax.paxtools.model.level3.Named, org.biopax.paxtools.model.level3.XReferrable)
      - org.biopax.paxtools.model.level3.Score (also extends org.biopax.paxtools.model.level3.XReferrable)
      - org.biopax.paxtools.model.level3.SequenceLocation
        
        org.biopax.paxtools.model.level3.SequenceInterval
        
        org.biopax.paxtools.model.level3.SequenceSite
      - org.biopax.paxtools.model.level3.Stoichiometry
      - org.biopax.paxtools.model.level3.Xref
        
        org.biopax.paxtools.model.level3.PublicationXref
        
        org.biopax.paxtools.model.level3.RelationshipXref
        
        org.biopax.paxtools.model.level3.UnificationXref
    - org.biopax.paxtools.model.level3.XReferrable
      - org.biopax.paxtools.model.level3.ControlledVocabulary (also extends org.biopax.paxtools.model.level3.UtilityClass)
        
        org.biopax.paxtools.model.level3.CellularLocationVocabulary
        
        org.biopax.paxtools.model.level3.CellVocabulary
        
        org.biopax.paxtools.model.level3.EntityReferenceTypeVocabulary
        
        org.biopax.paxtools.model.level3.EvidenceCodeVocabulary
        
        org.biopax.paxtools.model.level3.ExperimentalFormVocabulary
        
        org.biopax.paxtools.model.level3.InteractionVocabulary
        
        org.biopax.paxtools.model.level3.PhenotypeVocabulary
        
        org.biopax.paxtools.model.level3.RelationshipTypeVocabulary
        
        org.biopax.paxtools.model.level3.SequenceModificationVocabulary
        
        org.biopax.paxtools.model.level3.SequenceRegionVocabulary
        
        org.biopax.paxtools.model.level3.TissueVocabulary
      - org.biopax.paxtools.model.level3.Evidence (also extends org.biopax.paxtools.model.level3.UtilityClass)
      - org.biopax.paxtools.model.level3.Named
        
        org.biopax.paxtools.model.level3.BioSource (also extends org.biopax.paxtools.model.level3.UtilityClass)
        
        org.biopax.paxtools.model.level3.Entity (also extends org.biopax.paxtools.model.level3.Level3Element, org.biopax.paxtools.model.level3.Observable)
        
        org.biopax.paxtools.model.level3.Controller
        
        org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Process)
        
        org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Entity)
        
        org.biopax.paxtools.model.level3.Complex
        
        org.biopax.paxtools.model.level3.SimplePhysicalEntity
        
        org.biopax.paxtools.model.level3.SequenceEntity
        
        org.biopax.paxtools.model.level3.NucleicAcid
        
        org.biopax.paxtools.model.level3.Dna
        
        org.biopax.paxtools.model.level3.DnaRegion
        
        org.biopax.paxtools.model.level3.Rna
        
        org.biopax.paxtools.model.level3.RnaRegion
        
        org.biopax.paxtools.model.level3.Protein
        
        org.biopax.paxtools.model.level3.SmallMolecule
        
        org.biopax.paxtools.model.level3.Gene
        
        org.biopax.paxtools.model.level3.PhysicalEntity (also extends org.biopax.paxtools.model.level3.Controller)
        
        org.biopax.paxtools.model.level3.Complex
        
        org.biopax.paxtools.model.level3.SimplePhysicalEntity
        
        org.biopax.paxtools.model.level3.SequenceEntity
        
        org.biopax.paxtools.model.level3.NucleicAcid
        
        org.biopax.paxtools.model.level3.Dna
        
        org.biopax.paxtools.model.level3.DnaRegion
        
        org.biopax.paxtools.model.level3.Rna
        
        org.biopax.paxtools.model.level3.RnaRegion
        
        org.biopax.paxtools.model.level3.Protein
        
        org.biopax.paxtools.model.level3.SmallMolecule
        
        org.biopax.paxtools.model.level3.Process
        
        org.biopax.paxtools.model.level3.Interaction
        
        org.biopax.paxtools.model.level3.Control
        
        org.biopax.paxtools.model.level3.Catalysis
        
        org.biopax.paxtools.model.level3.Modulation
        
        org.biopax.paxtools.model.level3.TemplateReactionRegulation
        
        org.biopax.paxtools.model.level3.Conversion
        
        org.biopax.paxtools.model.level3.BiochemicalReaction
        
        org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.Transport)
        
        org.biopax.paxtools.model.level3.ComplexAssembly
        
        org.biopax.paxtools.model.level3.Degradation
        
        org.biopax.paxtools.model.level3.Transport
        
        org.biopax.paxtools.model.level3.TransportWithBiochemicalReaction (also extends org.biopax.paxtools.model.level3.BiochemicalReaction)
        
        org.biopax.paxtools.model.level3.GeneticInteraction
        
        org.biopax.paxtools.model.level3.MolecularInteraction
        
        org.biopax.paxtools.model.level3.TemplateReaction
        
        org.biopax.paxtools.model.level3.Pathway (also extends org.biopax.paxtools.model.level3.Controller)
        
        org.biopax.paxtools.model.level3.EntityReference (also extends org.biopax.paxtools.model.level3.Observable, org.biopax.paxtools.model.level3.UtilityClass)
        
        org.biopax.paxtools.model.level3.SequenceEntityReference
        
        org.biopax.paxtools.model.level3.NucleicAcidReference
        
        org.biopax.paxtools.model.level3.DnaReference
        
        org.biopax.paxtools.model.level3.NucleicAcidRegionReference
        
        org.biopax.paxtools.model.level3.DnaRegionReference
        
        org.biopax.paxtools.model.level3.RnaRegionReference
        
        org.biopax.paxtools.model.level3.RnaReference
        
        org.biopax.paxtools.model.level3.ProteinReference
        
        org.biopax.paxtools.model.level3.SmallMoleculeReference
        
        org.biopax.paxtools.model.level3.Provenance (also extends org.biopax.paxtools.model.level3.UtilityClass, org.biopax.paxtools.model.level3.XReferrable)
      - org.biopax.paxtools.model.level3.Provenance (also extends org.biopax.paxtools.model.level3.Named, org.biopax.paxtools.model.level3.UtilityClass)
      - org.biopax.paxtools.model.level3.Score (also extends org.biopax.paxtools.model.level3.UtilityClass)

Enum Class Hierarchy

java.lang.Object
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
  - org.biopax.paxtools.model.level3.CatalysisDirectionType
  - org.biopax.paxtools.model.level3.ControlType
  - org.biopax.paxtools.model.level3.ConversionDirectionType
  - org.biopax.paxtools.model.level3.PositionStatusType
  - org.biopax.paxtools.model.level3.StepDirection
  - org.biopax.paxtools.model.level3.StructureFormatType
  - org.biopax.paxtools.model.level3.TemplateDirectionType

Hierarchy For Package org.biopax.paxtools.model.level3

Interface Hierarchy

Enum Class Hierarchy