C E G I J O R

C

checkOntologyClassAndRegister(OntClass) - Method in class org.biopax.paxtools.io.jena.JenaEditorMap

convertToOWL(Model, OutputStream) - Method in class org.biopax.paxtools.io.jena.JenaIOHandler

Writes a model in OWL format using the an output stream.

createAndBind(Model) - Method in class org.biopax.paxtools.io.jena.JenaIOHandler

createAndRegisterBeanEditor(OntProperty, OntResource) - Method in class org.biopax.paxtools.io.jena.JenaEditorMap

E

extractClass(Resource) - Method in class org.biopax.paxtools.io.jena.JenaEditorMap

G

getDataTypeFor(PropertyEditor) - Method in class org.biopax.paxtools.io.jena.JenaEditorMap

getLevel() - Method in class org.biopax.paxtools.io.jena.JenaEditorMap

I

init() - Method in class org.biopax.paxtools.io.jena.JenaEditorMap

init(InputStream) - Method in class org.biopax.paxtools.io.jena.JenaIOHandler

J

JenaEditorMap - Class in org.biopax.paxtools.io.jena

This class is an editor map that uses Jena to read BioPAX OWL definition and creates property editors for BioPAX interfaces.

JenaEditorMap(BioPAXLevel) - Constructor for class org.biopax.paxtools.io.jena.JenaEditorMap

JenaIOHandler - Class in org.biopax.paxtools.io.jena

Provides I/O support for BioPAX models presented in OWL format using the com.hp.hpl.jena package.

JenaIOHandler() - Constructor for class org.biopax.paxtools.io.jena.JenaIOHandler

If set to true, "error-mode: strict" option will be passed to Jena reader.

JenaIOHandler(BioPAXLevel) - Constructor for class org.biopax.paxtools.io.jena.JenaIOHandler

JenaIOHandler(BioPAXFactory, BioPAXLevel) - Constructor for class org.biopax.paxtools.io.jena.JenaIOHandler

O

org.biopax.paxtools.io.jena - package org.biopax.paxtools.io.jena

This package contains a Jena bases reader/writer for reading BioPAX files.

R

readJenaModel(InputStream) - Method in class org.biopax.paxtools.io.jena.JenaIOHandler

readNameSpaces() - Method in class org.biopax.paxtools.io.jena.JenaIOHandler

resetEditorMap() - Method in class org.biopax.paxtools.io.jena.JenaIOHandler

C E G I J O R