org.biopax.paxtools.query.algorithm

Class CommonStreamQuery

java.lang.Object

org.biopax.paxtools.query.algorithm.CommonStreamQuery

public class CommonStreamQuery
extends Object

Searches common downstream or common upstream of a specified set of entities based on the given direction within the boundaries of a specified length limit. Takes a source set of entities, direction of the query and distance limit.

Author:

Ozgun Babur, Merve Cakir, Shatlyk Ashyralyev

Constructor Summary

Constructors

Constructor and Description
CommonStreamQuery(Collection<Set<Node>> sourceStateSet, Direction direction, int limit) Constructor for Common Stream with Entity States.
CommonStreamQuery(Set<Node> sourceNodeSet, Direction direction, int limit) Constructor for Common Stream with Selected Nodes.

Method Summary

Modifier and Type	Method and Description
Set<GraphObject>	run() Method to run the query.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CommonStreamQuery

public CommonStreamQuery(Set<Node> sourceNodeSet,
                         Direction direction,
                         int limit)

Constructor for Common Stream with Selected Nodes.

Parameters:

sourceNodeSet - Source nodes

direction - Common upstream or downstream. Cannot be bothstream

limit - Search length limit

CommonStreamQuery

public CommonStreamQuery(Collection<Set<Node>> sourceStateSet,
                         Direction direction,
                         int limit)

Constructor for Common Stream with Entity States.

Parameters:

sourceStateSet - Collection of source node sets

direction - Common upstream or downstream. Cannot be bothstream

limit - Search length limit

Method Detail

run

public Set<GraphObject> run()

Method to run the query.

Returns:

Common stream