Uses of Package
org.biopax.paxtools.query.algorithm

Packages that use org.biopax.paxtools.query.algorithm

Package	Description
org.biopax.paxtools.query	Graph-theoretic querying module in Paxtools is used for identifying paths between molecules or identifying other molecules that is reachable through some specific paths using the BioPAX data model.
org.biopax.paxtools.query.algorithm	This package contains the SIF rules for BioPAX Level 3.

Classes in org.biopax.paxtools.query.algorithm used by org.biopax.paxtools.query

Class and Description
Direction Direction is used for specifying upstream, downstream or both.
LimitType Specifies whether the length limit is a normal limit or shortest_plus_k limit.

Classes in org.biopax.paxtools.query.algorithm used by org.biopax.paxtools.query.algorithm

Class and Description
BFS Implements breadth-first search.
Direction Direction is used for specifying upstream, downstream or both.
LimitType Specifies whether the length limit is a normal limit or shortest_plus_k limit.