Uses of Package
org.biopax.paxtools.query.model

Packages that use org.biopax.paxtools.query.model

Package	Description
org.biopax.paxtools.query	Graph-theoretic querying module in Paxtools is used for identifying paths between molecules or identifying other molecules that is reachable through some specific paths using the BioPAX data model.
org.biopax.paxtools.query.algorithm	This package contains the SIF rules for BioPAX Level 3.
org.biopax.paxtools.query.model	This package contains the SIF rules for BioPAX Level 3.
org.biopax.paxtools.query.wrapperL3	This package contains TODO annotate!
org.biopax.paxtools.query.wrapperL3undirected	This package contains TODO annotate!

Classes in org.biopax.paxtools.query.model used by org.biopax.paxtools.query

Class and Description
Graph This graph interface is used in graph algorithms.
Node Node interface to use in graph algorithms.

Classes in org.biopax.paxtools.query.model used by org.biopax.paxtools.query.algorithm

Class and Description
Edge Wrapper interface for edges in a graph to be queried.
GraphObject A graph object is the common interface for nodes and edges in a graph.
Node Node interface to use in graph algorithms.

Classes in org.biopax.paxtools.query.model used by org.biopax.paxtools.query.model

Class and Description
Edge Wrapper interface for edges in a graph to be queried.
Graph This graph interface is used in graph algorithms.
GraphObject A graph object is the common interface for nodes and edges in a graph.
Node Node interface to use in graph algorithms.

Classes in org.biopax.paxtools.query.model used by org.biopax.paxtools.query.wrapperL3

Class and Description
AbstractEdge The base class for an edge in the traversed graph.
AbstractGraph Adapter class for a graph that is queried.
AbstractNode
Edge Wrapper interface for edges in a graph to be queried.
Graph This graph interface is used in graph algorithms.
GraphObject A graph object is the common interface for nodes and edges in a graph.
Node Node interface to use in graph algorithms.

Classes in org.biopax.paxtools.query.model used by org.biopax.paxtools.query.wrapperL3undirected

Class and Description
AbstractGraph Adapter class for a graph that is queried.
AbstractNode
Graph This graph interface is used in graph algorithms.
GraphObject A graph object is the common interface for nodes and edges in a graph.
Node Node interface to use in graph algorithms.